STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcop_0554KEGG: bfs:BF0388 hypothetical protein; SPTR: Putative helix-hairpin-helix motif protein; IMG reference gene:2504106228. (297 aa)    
Predicted Functional Partners:
Bcop_0555
KEGG: bfr:BF0450 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106229; PFAM: VanZ like family.
 
     0.733
Bcop_0391
KEGG: bfs:BF0013 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106053.
  
     0.690
Bcop_0267
KEGG: bth:BT_3446 cell division protein FtsQ; SPTR: Putative uncharacterized protein; manually curated; IMG reference gene:2504105926.
  
     0.640
Bcop_0370
COGs: COG1587 Uroporphyrinogen-III synthase; InterPro IPR003754; KEGG: bfs:BF0075 uroporphyrinogen-III synthase; PFAM: Tetrapyrrole biosynthesis, uroporphyrinogen III synthase; SPTR: Uroporphyrinogen-III synthase; IMG reference gene:2504106031; PFAM: Uroporphyrinogen-III synthase HemD.
  
     0.603
Bcop_1308
Outer membrane chaperone Skp (OmpH); InterPro IPR005632; KEGG: bvu:BVU_2370 hypothetical protein; PFAM: Outer membrane chaperone Skp (OmpH); SMART: Outer membrane chaperone Skp (OmpH); SPTR: Putative uncharacterized protein; IMG reference gene:2504107015; PFAM: Outer membrane protein (OmpH-like).
 
     0.594
Bcop_2404
KEGG: bfr:BF1077 peptidyl-prolyl cis-trans isomerase; SPTR: Peptidyl-prolyl cis-trans isomerase; IMG reference gene:2504108136.
 
     0.572
Bcop_2192
KEGG: bth:BT_0316 putative hemin receptor; SPTR: Putative hemin receptor; IMG reference gene:2504107913; PFAM: Outer membrane protein transport protein (OMPP1/FadL/TodX).
  
     0.550
Bcop_0027
KEGG: bfs:BF0951 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504105682; PFAM: Outer membrane lipoprotein carrier protein LolA.
  
     0.518
Bcop_0984
KEGG: bfs:BF2638 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106685; PFAM: RNA polymerase Rpb6.
 
     0.510
Bcop_0510
Ribosomal subunit interface protein; InterPro IPR003489; KEGG: bth:BT_2741 sigma-54 modulation protein; SPTR: Ribosomal subunit interface protein; TIGRFAM: Ribosomal protein S30Ae/sigma 54 modulation protein; IMG reference gene:2504106177; PFAM: Sigma 54 modulation protein / S30EA ribosomal protein; TIGRFAM: ribosomal subunit interface protein.
 
     0.491
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
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