STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
Bcop_0560Peptidase U62 modulator of DNA gyrase; COGs: COG0312 Zn-dependent protease and their inactivated homologs; InterPro IPR002510; KEGG: bth:BT_3649 putative modulator of DNA gyrase; PFAM: Peptidase U62, modulator of DNA gyrase; SPTR: Putative uncharacterized protein; IMG reference gene:2504106234; PFAM: Putative modulator of DNA gyrase. (439 aa)    
Predicted Functional Partners:
Bcop_0559
Peptidase U62 modulator of DNA gyrase; COGs: COG0312 Zn-dependent protease and their inactivated homologs; InterPro IPR002510; KEGG: bth:BT_3648 putative modulator of DNA gyrase; PFAM: Peptidase U62, modulator of DNA gyrase; SPTR: Putative uncharacterized protein; IMG reference gene:2504106233; PFAM: Putative modulator of DNA gyrase.
 
    
0.840
dacA
Conserved hypothetical protein CHP00159; Catalyzes the condensation of 2 ATP molecules into cyclic di- AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria.
       0.754
Bcop_0557
COGs: COG0294 Dihydropteroate synthase; InterPro IPR000489:IPR006390; KEGG: bvu:BVU_0517 dihydropteroate synthase; PFAM: Pterin-binding; PRIAM: Dihydropteroate synthase; SPTR: Dihydropteroate synthase; TIGRFAM: Dihydropteroate synthase; IMG reference gene:2504106231; PFAM: Pterin binding enzyme; TIGRFAM: dihydropteroate synthase.
       0.696
murF
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.
       0.473
Bcop_0450
KEGG: bvu:BVU_0830 hypothetical protein; SPTR: Putative lipoprotein; IMG reference gene:2504106114; PFAM: OmpW family.
  
     0.441
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
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