STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
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[Homology]
Score
Bcop_0562COGs: COG4866 conserved hypothetical protein; KEGG: bth:BT_3689 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106236; PFAM: Uncharacterized conserved protein (DUF2156). (306 aa)    
Predicted Functional Partners:
Bcop_0561
GCN5-related N-acetyltransferase; COGs: COG4552 acetyltransferase involved in intracellular survival and related acetyltransferase; InterPro IPR000182; KEGG: bfr:BF0471 putative acetyltransferase; PFAM: GCN5-related N-acetyltransferase (GNAT) domain; SPTR: Acetyltransferase, GNAT family; IMG reference gene:2504106235; PFAM: Acetyltransferase (GNAT) family.
     0.970
Bcop_1067
Glyoxalase/bleomycin resistance protein/dioxygenase; InterPro IPR004360; KEGG: bfs:BF1382 putative lactoylglutathione lyase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: Lactoylglutathione lyase; IMG reference gene:2504106769; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily.
  
     0.740
Bcop_0563
LrgB family protein; COGs: COG1346 Putative effector of murein hydrolase; InterPro IPR007300; KEGG: bfs:BF0417 LrgB family transmembrane protein; PFAM: LrgB-like protein; SPTR: Putative membrane protein; IMG reference gene:2504106237; PFAM: LrgB-like family; TIGRFAM: TIGR00659 family protein.
       0.707
Bcop_0564
LrgA family protein; COGs: COG1380 Putative effector of murein hydrolase LrgA; InterPro IPR005538; KEGG: bfs:BF0418 putative transmembrane holin-like protein LrgA; PFAM: Uncharacterised protein family LrgA/YohJ; SPTR: Putative membrane protein; IMG reference gene:2504106238; PFAM: LrgA family.
       0.707
Bcop_1069
Hypothetical protein; COGs: COG2220 Zn-dependent hydrolase of the beta-lactamase fold; KEGG: bfs:BF1384 hypothetical protein; SPTR: Putative metal dependent hydrolase; IMG reference gene:2504106771.
  
    0.675
ispF
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4-diphosphocytidyl-2- C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP).
 
      0.553
Bcop_0565
Phosphate acetyltransferase; COGs: COG0280 Phosphotransacetylase; InterPro IPR002505:IPR004614; KEGG: bfs:BF0423 putative phosphate acetyltransferase; PFAM: Phosphate acetyl/butaryl transferase; PRIAM: Phosphate acetyltransferase; SPTR: Phosphate acetyltransferase; TIGRFAM: Phosphate acetyltransferase; IMG reference gene:2504106239; PFAM: Phosphate acetyl/butaryl transferase; TIGRFAM: phosphate acetyltransferase.
       0.483
ackA
Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.
       0.443
Bcop_1545
InterPro IPR001450; KEGG: emi:Emin_0310 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; PFAM: 4Fe-4S binding domain; SPTR: Putative uncharacterized protein; IMG reference gene:2504107260.
  
     0.418
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
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