STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcop_0589KEGG: bth:BT_3714 hypothetical protein; SPTR: Phospholipid/glycerol acyltransferase; IMG reference gene:2504106263; PFAM: Acyltransferase. (382 aa)    
Predicted Functional Partners:
Bcop_0590
KEGG: bfs:BF0437 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106264.
       0.844
Bcop_0591
Rhodanese-like protein; COGs: COG0607 Rhodanese-related sulfurtransferase; InterPro IPR001763; KEGG: bth:BT_3716 hypothetical protein; PFAM: Rhodanese-like; SMART: Rhodanese-like; SPTR: Putative uncharacterized protein; IMG reference gene:2504106265; PFAM: Rhodanese-like domain.
       0.844
Bcop_0587
Pseudouridine synthase, RluA family; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
       0.840
ddl
D-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
       0.840
Bcop_0586
InterPro IPR005543; KEGG: bfs:BF0433 PASTA-domain-containing protein; PFAM: PASTA; SMART: PASTA; SPTR: Putative uncharacterized protein; manually curated; IMG reference gene:2504106260; PFAM: PASTA domain.
       0.797
Bcop_0535
D-lactate dehydrogenase (cytochrome); COGs: COG0277 FAD/FMN-containing dehydrogenase; InterPro IPR006094:IPR004113; KEGG: bfs:BF0370 putative FAD-binding oxidoreductase; PFAM: FAD-linked oxidase, C-terminal; FAD linked oxidase, N-terminal; PRIAM: D-lactate dehydrogenase (cytochrome); SPTR: Putative uncharacterized protein; IMG reference gene:2504106209; PFAM: FAD binding domain; FAD linked oxidases, C-terminal domain.
  
  
  0.618
rpmH
HAMAP: Ribosomal protein L34; InterPro IPR000271; KEGG: bvu:BVU_0530 50S ribosomal protein L34; PFAM: Ribosomal protein L34; SPTR: 50S ribosomal protein L34; TIGRFAM: Ribosomal protein L34; IMG reference gene:2504106259; PFAM: Ribosomal protein L34; TIGRFAM: ribosomal protein L34, bacterial type; Belongs to the bacterial ribosomal protein bL34 family.
       0.603
Bcop_1019
KEGG: bfs:BF2824 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106721.
 
     0.541
efp
Elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.
  
    0.532
Bcop_1264
Two component transcriptional regulator, AraC family; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterProIPR011110:IPR011123:IPR003661:IPR001789:IPR 000005:IPR018060; KEGG: bth:BT_2628 two-component system sensor histidine kinase/response regulator, hybrid ('one-component system'); PFAM: HTH transcriptional regulator, AraC; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Two component regulator three Y; Two component regulator propeller; Signal transduction response regulator, receiver domain; SMART: Helix-turn-helix, AraC type [...]
  
 
 0.477
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
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