STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
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[Homology]
Score
Bcop_0591Rhodanese-like protein; COGs: COG0607 Rhodanese-related sulfurtransferase; InterPro IPR001763; KEGG: bth:BT_3716 hypothetical protein; PFAM: Rhodanese-like; SMART: Rhodanese-like; SPTR: Putative uncharacterized protein; IMG reference gene:2504106265; PFAM: Rhodanese-like domain. (128 aa)    
Predicted Functional Partners:
Bcop_0589
KEGG: bth:BT_3714 hypothetical protein; SPTR: Phospholipid/glycerol acyltransferase; IMG reference gene:2504106263; PFAM: Acyltransferase.
       0.821
Bcop_0590
KEGG: bfs:BF0437 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106264.
       0.821
Bcop_0587
Pseudouridine synthase, RluA family; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
       0.818
ddl
D-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
       0.818
Bcop_0625
CoA-disulfide reductase; COGs: COG0446 NAD(FAD)-dependent dehydrogenase; InterPro IPR013027:IPR004099:IPR001455:IPR001763; KEGG: bfs:BF0525 putative pyridine nucleotide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation; SirA-like; PRIAM: CoA-disulfide reductase; SMART: Rhodanese-like; SPTR: Pyridine nucleotide-disulphide oxidoreductase; IMG reference gene:2504106303; PFAM: Pyridine nucleotide-disulphide oxidoreductase; SirA-like protein; Pyridine nucleotide-disulphide oxidoreductase, dimerisati [...]
  
 
 0.791
Bcop_0586
InterPro IPR005543; KEGG: bfs:BF0433 PASTA-domain-containing protein; PFAM: PASTA; SMART: PASTA; SPTR: Putative uncharacterized protein; manually curated; IMG reference gene:2504106260; PFAM: PASTA domain.
       0.771
Bcop_0930
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
   
 0.636
Bcop_2341
COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR000873; KEGG: bba:Bd0279 long-chain fatty-acid-CoA ligase; PFAM: AMP-dependent synthetase/ligase; SPTR: Coronafacic acid synthetase, ligase component; IMG reference gene:2504108072; PFAM: AMP-binding enzyme.
  
   0.553
Bcop_0535
D-lactate dehydrogenase (cytochrome); COGs: COG0277 FAD/FMN-containing dehydrogenase; InterPro IPR006094:IPR004113; KEGG: bfs:BF0370 putative FAD-binding oxidoreductase; PFAM: FAD-linked oxidase, C-terminal; FAD linked oxidase, N-terminal; PRIAM: D-lactate dehydrogenase (cytochrome); SPTR: Putative uncharacterized protein; IMG reference gene:2504106209; PFAM: FAD binding domain; FAD linked oxidases, C-terminal domain.
    
  0.548
Bcop_1298
Beta-lactamase domain protein; COGs: COG0491 Zn-dependent hydrolase including glyoxylase; InterPro IPR001279; KEGG: bfr:BF2026 putative metallo-beta-lactamase; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like; SPTR: Putative metallo-beta-lactamase; IMG reference gene:2504107005; PFAM: Metallo-beta-lactamase superfamily.
  
 0.513
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
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