STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcop_0624Regulatory protein MarR; InterPro IPR000835; KEGG: bfs:BF0524 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR; SPTR: Putative transcriptional regulator; IMG reference gene:2504106302; PFAM: MarR family. (117 aa)    
Predicted Functional Partners:
Bcop_0625
CoA-disulfide reductase; COGs: COG0446 NAD(FAD)-dependent dehydrogenase; InterPro IPR013027:IPR004099:IPR001455:IPR001763; KEGG: bfs:BF0525 putative pyridine nucleotide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation; SirA-like; PRIAM: CoA-disulfide reductase; SMART: Rhodanese-like; SPTR: Pyridine nucleotide-disulphide oxidoreductase; IMG reference gene:2504106303; PFAM: Pyridine nucleotide-disulphide oxidoreductase; SirA-like protein; Pyridine nucleotide-disulphide oxidoreductase, dimerisati [...]
 
  
 0.909
Bcop_0775
KEGG: bth:BT_4239 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106463; PFAM: Protein of unknown function (DUF3256).
  
     0.713
Bcop_2168
Sporulation domain-containing protein; InterPro IPR007730; KEGG: bfs:BF1670 hypothetical protein; PFAM: Sporulation-related domain; SPTR: Putative uncharacterized protein; IMG reference gene:2504107889; PFAM: Sporulation related domain.
  
    0.668
Bcop_1495
GtrA family protein; InterPro IPR007267; KEGG: bfs:BF2464 hypothetical protein; PFAM: GtrA-like protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504107206; PFAM: GtrA-like protein.
  
     0.634
Bcop_0527
KEGG: bth:BT_3578 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106201; PFAM: Protein of unknown function (DUF3316).
  
     0.586
Bcop_0672
KEGG: bth:BT_2228 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106352.
  
     0.560
Bcop_2100
Excisionase; KEGG: bvu:BVU_1497 excisionase; SPTR: Excisionase; IMG reference gene:2504107821; TIGRFAM: DNA binding domain, excisionase family.
  
     0.547
Bcop_0865
KEGG: bth:BT_4721 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106555.
  
    0.519
Bcop_2188
KEGG: bfs:BF1652 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504107909.
  
     0.517
Bcop_1231
Protein of unknown function DUF490; InterPro IPR007452; KEGG: bth:BT_0921 hypothetical protein; PFAM: Protein of unknown function DUF490; SPTR: Putative uncharacterized protein; IMG reference gene:2504106935; PFAM: Family of unknown function (DUF490).
  
     0.481
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
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