STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcop_0664UPF0102 protein yraN; COGs: COG0792 endonuclease distantly related to Holliday junction resolvase; HAMAP: Uncharacterised protein family UPF0102; InterPro IPR003509; KEGG: fps:FP0059 hypothetical protein; PFAM: Uncharacterised protein family UPF0102; SPTR: UPF0102 protein FP0059; IMG reference gene:2504106344; PFAM: Uncharacterised protein family UPF0102; TIGRFAM: TIGR00252 family protein. (121 aa)    
Predicted Functional Partners:
Bcop_0663
COGs: COG0340 Biotin-(acetyl-CoA carboxylase) ligase; InterPro IPR004143:IPR004408; KEGG: bfr:BF0704 putative biotin-(acetyl-CoA carboxylase) synthetase; PFAM: Biotin/lipoate A/B protein ligase; SPTR: Putative uncharacterized protein; TIGRFAM: Biotin--acetyl-CoA-carboxylase ligase; IMG reference gene:2504106343; PFAM: Biotin/lipoate A/B protein ligase family; TIGRFAM: birA, biotin-[acetyl-CoA-carboxylase] ligase region.
       0.821
Bcop_0463
Mg chelatase, subunit ChlI; COGs: COG0606 ATPase with chaperone activity; InterPro IPR003593:IPR000523:IPR004482; KEGG: bth:BT_2846 magnesium chelatase, subunit ChlI; PFAM: Magnesium chelatase, ChlI subunit; SMART: ATPase, AAA+ type, core; SPTR: Putative uncharacterized protein; TIGRFAM: Mg chelatase-related protein; IMG reference gene:2504106130; PFAM: Magnesium chelatase, subunit ChlI; TIGRFAM: Mg chelatase-related protein.
 
    0.774
Bcop_0435
COGs: COG1040 amidophosphoribosyltransferase; InterPro IPR000836; KEGG: bth:BT_2800 putative amidophosphoribosyl-transferase; PFAM: Phosphoribosyltransferase; SPTR: Predicted amidophosphoribosyltransferases; IMG reference gene:2504106099; PFAM: Phosphoribosyl transferase domain; TIGRFAM: comF family protein.
 
    0.677
Bcop_0665
KEGG: bfs:BF0636 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106345.
  
    0.674
tadA
CMP/dCMP deaminase zinc-binding; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
       0.670
Bcop_1328
SMF family protein; COGs: COG0758 Rossmann fold nucleotide-binding protein involved in DNA uptake; InterPro IPR003488; KEGG: bvu:BVU_3406 putative DNA processing enzyme DprA; PFAM: DNA recombination-mediator protein A; SPTR: Putative DNA processing enzyme DprA; IMG reference gene:2504107036; PFAM: DNA recombination-mediator protein A; TIGRFAM: DNA protecting protein DprA.
 
    0.638
Bcop_0445
DNA protecting protein DprA; COGs: COG0758 Rossmann fold nucleotide-binding protein involved in DNA uptake; InterPro IPR003488; KEGG: bfr:BF4562 smf protein DNA processing chain A; PFAM: DNA recombination-mediator protein A; SPTR: Putative DNA processing Smf-like protein; TIGRFAM: DNA recombination-mediator protein A; IMG reference gene:2504106109; PFAM: DNA recombination-mediator protein A; TIGRFAM: DNA protecting protein DprA.
 
    0.612
Bcop_0123
COGs: COG0658 membrane metal-binding protein; InterPro IPR004477; KEGG: bfs:BF3671 putative competence related membrane protein; PFAM: ComEC/Rec2-related protein; SPTR: Putative competence related membrane protein; TIGRFAM: ComEC/Rec2-related protein; IMG reference gene:2504105779; PFAM: Competence protein; TIGRFAM: ComEC/Rec2-related protein.
  
    0.561
ruvC
Crossover junction endodeoxyribonuclease ruvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.
 
     0.431
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.