STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcop_0678Peptidase M28; COGs: COG2234 aminopeptidase; InterPro IPR007484; KEGG: bfs:BF0657 putative aminopeptidase; PFAM: Peptidase M28; SPTR: Putative uncharacterized protein; IMG reference gene:2504106358; PFAM: Peptidase family M28. (332 aa)    
Predicted Functional Partners:
Bcop_0742
Dipeptidyl-peptidase IV; COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; InterPro IPR002469:IPR001375; KEGG: bfs:BF0899 putative dipeptidyl peptidase; PFAM: Peptidase S9B, dipeptidylpeptidase IV N-terminal; Peptidase S9, prolyl oligopeptidase, catalytic domain; PRIAM: Dipeptidyl-peptidase IV; SPTR: Dipeptidyl peptidase IV; IMG reference gene:2504106430; PFAM: Prolyl oligopeptidase family; Dipeptidyl peptidase IV (DPP IV) N-terminal region.
  
    0.614
Bcop_0322
Dipeptidyl-peptidase IV; COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; InterPro IPR002469:IPR001375; KEGG: bfr:BF0085 dipeptidyl peptidase IV; PFAM: Peptidase S9B, dipeptidylpeptidase IV N-terminal; Peptidase S9, prolyl oligopeptidase, catalytic domain; PRIAM: Dipeptidyl-peptidase IV; SPTR: Putative uncharacterized protein; manually curated; IMG reference gene:2504105983; PFAM: Prolyl oligopeptidase family; Dipeptidyl peptidase IV (DPP IV) N-terminal region.
  
    0.583
Bcop_0677
3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate.
       0.529
Bcop_0296
InterPro IPR002931; KEGG: bfr:BF1133 hypothetical protein; PFAM: Transglutaminase-like; SMART: Transglutaminase-like; SPTR: Putative uncharacterized protein; IMG reference gene:2504105957; PFAM: Transglutaminase-like superfamily.
  
     0.527
Bcop_1399
Sphingomyelin phosphodiesterase; COGs: COG1524 Uncharacterized protein of the AP superfamily; InterPro IPR002591; KEGG: bfs:BF2358 putative phosphodiesterase-nucleotide pyrophosphatase; PFAM: Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase; PRIAM: Sphingomyelin phosphodiesterase; SPTR: Probable phosphodiesterase I; IMG reference gene:2504107108; PFAM: Type I phosphodiesterase / nucleotide pyrophosphatase.
  
     0.504
Bcop_0898
Protein of unknown function DUF1460; InterPro IPR010846; KEGG: bth:BT_1087 putative xylanase; PFAM: Protein of unknown function DUF1460; SPTR: Xylanase; IMG reference gene:2504106593; PFAM: Protein of unknown function (DUF1460).
    
 0.492
Bcop_0980
InterPro IPR001440; KEGG: bfs:BF2852 hypothetical protein; PFAM: Tetratricopeptide TPR-1; SPTR: Putative uncharacterized protein; IMG reference gene:2504106681.
  
     0.484
Bcop_0676
KEGG: bfs:BF0656 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106356.
       0.478
Bcop_1445
COGs: COG0260 Leucyl aminopeptidase; InterPro IPR008283:IPR000819; KEGG: rmr:Rmar_1710 leucyl aminopeptidase; PFAM: Peptidase M17, leucyl aminopeptidase, C-terminal; Peptidase M17, leucyl aminopeptidase, N-terminal; SPTR: Cytosol aminopeptidase; IMG reference gene:2504107156; PFAM: Cytosol aminopeptidase family, catalytic domain.
     
 0.452
Bcop_0675
ABC-3 protein; COGs: COG1108 ABC-type Mn2+/Zn2+ transport systems permease components; InterPro IPR001626; KEGG: bfs:BF0655 putative ABC transporter membrane protein; PFAM: ABC-3; SPTR: Zinc ABC transporter permease; IMG reference gene:2504106355; PFAM: ABC 3 transport family.
       0.437
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
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