STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcop_0691KEGG: bfs:BF0678 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106372. (227 aa)    
Predicted Functional Partners:
Bcop_0690
KEGG: bth:BT_3980 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106371.
 
     0.857
Bcop_2402
KEGG: bth:BT_4373 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504108134.
  
     0.774
Bcop_2407
KEGG: bfs:BF0991 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504108139.
  
     0.774
Bcop_0071
InterPro IPR003400; KEGG: bfs:BF3528 hypothetical protein; PFAM: Biopolymer transport protein ExbD/TolR; SPTR: Putative uncharacterized protein; IMG reference gene:2504105726; PFAM: Biopolymer transport protein ExbD/TolR; overlaps another CDS with the same product name.
  
     0.765
Bcop_0692
COGs: COG0507 ATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase superfamily I member; KEGG: bth:BT_3982 exonuclease V subunit alpha; SPTR: ATP-dependent exoDNAse (Exonuclease V), alpha subunit-helicase superfamily I member; IMG reference gene:2504106373; PFAM: PIF1 helicase.
 
     0.751
Bcop_0070
InterPro IPR003400; KEGG: bfs:BF3527 hypothetical protein; PFAM: Biopolymer transport protein ExbD/TolR; SPTR: Putative uncharacterized protein; IMG reference gene:2504105725; PFAM: Biopolymer transport protein ExbD/TolR; overlaps another CDS with the same product name.
  
     0.749
Bcop_0689
Conserved hypothetical protein CHP00095; COGs: COG0742 N6-adenine-specific methylase; InterPro IPR004398; KEGG: bfs:BF0676 putative methyltransferase; PFAM: RNA methyltransferase, RsmD; SPTR: Putative methyltransferase; IMG reference gene:2504106370; PFAM: Conserved hypothetical protein 95; TIGRFAM: RNA methyltransferase, RsmD family.
       0.740
Bcop_0072
KEGG: bfs:BF3529 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504105727.
  
     0.707
Bcop_2075
Positive regulator of sigma(E) RseC/MucC; InterPro IPR007359; KEGG: bth:BT_0616 hypothetical protein; PFAM: Positive regulator of sigma(E), RseC/MucC; SPTR: Positive regulator of sigma(E), RseC/MucC superfamily; IMG reference gene:2504107795; PFAM: Positive regulator of sigma(E), RseC/MucC.
  
     0.695
Bcop_0149
TonB family protein; InterPro IPR006260; KEGG: bfs:BF3737 putative TonB exported protein; SPTR: Putative TonB exported protein; TIGRFAM: TonB, C-terminal; IMG reference gene:2504105805; PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain.
  
     0.679
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
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