STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcop_0692COGs: COG0507 ATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase superfamily I member; KEGG: bth:BT_3982 exonuclease V subunit alpha; SPTR: ATP-dependent exoDNAse (Exonuclease V), alpha subunit-helicase superfamily I member; IMG reference gene:2504106373; PFAM: PIF1 helicase. (472 aa)    
Predicted Functional Partners:
Bcop_0691
KEGG: bfs:BF0678 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106372.
 
     0.751
Bcop_0990
UvrD/REP helicase; COGs: COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains); InterPro IPR000212; KEGG: bth:BT_1054 ATP-dependent helicase; PFAM: DNA helicase, UvrD/REP type; SPTR: UvrD/REP helicase; IMG reference gene:2504106691; PFAM: Domain of unknown function DUF83; UvrD/REP helicase.
 
 
 0.730
Bcop_0690
KEGG: bth:BT_3980 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106371.
 
     0.680
Bcop_0689
Conserved hypothetical protein CHP00095; COGs: COG0742 N6-adenine-specific methylase; InterPro IPR004398; KEGG: bfs:BF0676 putative methyltransferase; PFAM: RNA methyltransferase, RsmD; SPTR: Putative methyltransferase; IMG reference gene:2504106370; PFAM: Conserved hypothetical protein 95; TIGRFAM: RNA methyltransferase, RsmD family.
       0.631
Bcop_1179
KEGG: bth:BT_0701 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106882.
  
     0.551
Bcop_0510
Ribosomal subunit interface protein; InterPro IPR003489; KEGG: bth:BT_2741 sigma-54 modulation protein; SPTR: Ribosomal subunit interface protein; TIGRFAM: Ribosomal protein S30Ae/sigma 54 modulation protein; IMG reference gene:2504106177; PFAM: Sigma 54 modulation protein / S30EA ribosomal protein; TIGRFAM: ribosomal subunit interface protein.
 
     0.536
Bcop_0706
Protein of unknown function DUF349; InterPro IPR007139; KEGG: bfs:BF0704 hypothetical protein; PFAM: Protein of unknown function DUF349; SPTR: Putative uncharacterized protein; IMG reference gene:2504106388; PFAM: Domain of Unknown Function (DUF349).
  
     0.507
Bcop_1574
InterPro IPR007409; KEGG: bfs:BF2478 hypothetical protein; PFAM: Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N-terminal; SPTR: Putative uncharacterized protein; IMG reference gene:2504107289; PFAM: Type I restriction enzyme R protein N terminus (HSDR_N).
  
     0.503
Bcop_0975
DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
   
 
 0.499
purL
Phosphoribosylformylglycinamidine synthase; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate.
  
    0.497
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
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