STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcop_0697KEGG: bth:BT_4000 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106378. (274 aa)    
Predicted Functional Partners:
Bcop_0698
parB-like partition protein; COGs: COG1475 transcriptional regulator protein; InterPro IPR003115:IPR004437; KEGG: bfs:BF0695 putative ParB-like chromosome partitioning protein; PFAM: ParB-like nuclease; SMART: ParB-like nuclease; SPTR: Putative chromosome partitioning protein ParB; TIGRFAM: ParB-like partition protein; IMG reference gene:2504106379; PFAM: ParB-like nuclease domain; TIGRFAM: ParB-like partition proteins; Belongs to the ParB family.
       0.844
Bcop_0699
Cobyrinic acid ac-diamide synthase; COGs: COG1192 ATPase involved in chromosome partitioning; InterPro IPR002586; KEGG: bth:BT_4002 ParaA family ATPase; PFAM: Cobyrinic acid a,c-diamide synthase; SPTR: ATPase, ParA family; IMG reference gene:2504106380; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain.
       0.837
Bcop_0696
COGs: COG0741 Soluble lytic murein transglycosylase and related regulatory protein (some contain LysM/invasin domains); InterPro IPR008258:IPR018392:IPR002482; KEGG: bfs:BF0693 putative lytic murein transglycosylase; PFAM: Lytic transglycosylase-like, catalytic; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup; SPTR: Membrane-bound lytic murein transglycosylase D presursor; IMG reference gene:2504106377; PFAM: Transglycosylase SLT domain; LysM domain.
  
    0.811
Bcop_2456
Hypothetical protein; COGs: COG1452 Organic solvent tolerance protein OstA; KEGG: bfr:BF3817 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504108189.
  
    0.771
Bcop_2404
KEGG: bfr:BF1077 peptidyl-prolyl cis-trans isomerase; SPTR: Peptidyl-prolyl cis-trans isomerase; IMG reference gene:2504108136.
  
     0.756
Bcop_2399
KEGG: bth:BT_4376 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504108131.
  
    0.745
Bcop_2408
KEGG: bth:BT_4367 putative outer membrane protein; SPTR: Putative outer membrane protein; IMG reference gene:2504108140; PFAM: Outer membrane protein transport protein (OMPP1/FadL/TodX).
  
     0.737
Bcop_0936
InterPro IPR019734:IPR001440; KEGG: bth:BT_4254 hypothetical protein; PFAM: Tetratricopeptide TPR-1; SPTR: Putative uncharacterized protein; IMG reference gene:2504106637.
  
     0.734
Bcop_0695
(p)ppGpp synthetase I, SpoT/RelA; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.
 
     0.731
Bcop_0329
KEGG: bth:BT_3247 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504105990; PFAM: Protein of unknown function (DUF2723).
  
     0.729
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.