STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcop_0728Dipeptidyl-peptidase III; InterPro IPR005317; KEGG: bfs:BF3247 putative membrane attached peptidase; PFAM: Peptidase M49, dipeptidyl-peptidase III; PRIAM: Dipeptidyl-peptidase III; SPTR: Putative uncharacterized protein; IMG reference gene:2504106416; PFAM: Peptidase family M49. (682 aa)    
Predicted Functional Partners:
Bcop_0729
KEGG: bfs:BF3246 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106417; PFAM: DNA alkylation repair enzyme.
 
     0.858
purA
Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.
  
  0.791
Bcop_0730
Ferric uptake regulator, Fur family; COGs: COG0735 Fe2+/Zn2+ uptake regulation protein; InterPro IPR002481; KEGG: bfs:BF3244 putative iron storage-related regulatory protein; PFAM: Ferric-uptake regulator; SPTR: Putative uncharacterized protein; IMG reference gene:2504106418; PFAM: Ferric uptake regulator family; Belongs to the Fur family.
       0.723
Bcop_0727
Transcriptional regulator, AraC family; COGs: COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain; InterPro IPR000005:IPR018060; KEGG: bfs:BF3248 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain; SPTR: Putative uncharacterized protein; IMG reference gene:2504106415; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family.
       0.682
Bcop_0984
KEGG: bfs:BF2638 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106685; PFAM: RNA polymerase Rpb6.
  
 
  0.655
Bcop_1646
KEGG: pdi:BDI_0754 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504107362.
  
 0.652
Bcop_0726
COGs: COG0514 Superfamily II DNA helicase; InterProIPR011545:IPR001650:IPR018982:IPR002121:IPR 014001:IPR006293:IPR004589; KEGG: bfs:BF3249 putative ATP-dependent DNA helicase; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; RQC domain; Helicase/RNase D C-terminal, HRDC domain; SMART: RQC domain; DEAD-like helicase, N-terminal; Helicase, C-terminal; Helicase/RNase D C-terminal, HRDC domain; SPTR: ATP-dependent DNA helicase RecQ; TIGRFAM: DNA helicase, ATP-dependent, RecQ type, bacterial; DNA helicase, ATP-dependent, RecQ type; IMG reference gene:2504106414 [...]
   
   0.639
Bcop_1254
COGs: COG1215 Glycosyltransferase probably involved in cell wall biogenesis; InterPro IPR001173; KEGG: bfr:BF1590 hypothetical protein; PFAM: Glycosyl transferase, family 2; SPTR: Putative uncharacterized protein; IMG reference gene:2504106960; PFAM: Glycosyl transferase family 2.
  
 
 0.631
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
    
  0.608
Bcop_1426
COGs: COG0013 Alanyl-tRNA synthetase; InterPro IPR012947; KEGG: bfr:BF2624 alanyl-tRNA synthetase; PFAM: Threonyl/alanyl tRNA synthetase, SAD; SMART: Threonyl/alanyl tRNA synthetase, SAD; SPTR: Putative alanyl-tRNA synthetase; IMG reference gene:2504107135; PFAM: Threonyl and Alanyl tRNA synthetase second additional domain.
    
  0.608
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
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