STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcop_0740KEGG: bfs:BF0897 putative transmembrane protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106428. (372 aa)    
Predicted Functional Partners:
Bcop_0438
KEGG: bth:BT_2817 putative TonB-dependent receptor; SPTR: Putative uncharacterized protein; IMG reference gene:2504106102.
  
     0.770
Bcop_0808
KEGG: bth:BT_0178 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106497; PFAM: Protein of unknown function (DUF1282).
  
    0.769
Bcop_2250
KEGG: bfs:BF3126 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504107971.
  
     0.769
Bcop_0072
KEGG: bfs:BF3529 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504105727.
  
     0.767
Bcop_1547
InterPro IPR001440:IPR019734; KEGG: bfr:BF2412 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR-1; SMART: Tetratricopeptide repeat; SPTR: Putative uncharacterized protein; IMG reference gene:2504107262; PFAM: Tetratricopeptide repeat.
  
     0.757
Bcop_2424
KEGG: bth:BT_4341 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504108156.
  
     0.755
Bcop_0672
KEGG: bth:BT_2228 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106352.
  
     0.748
Bcop_0527
KEGG: bth:BT_3578 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106201; PFAM: Protein of unknown function (DUF3316).
  
     0.745
Bcop_1171
KEGG: bfs:BF1824 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106874.
  
     0.743
Bcop_2007
Histidine kinase; COGs: COG2205 Osmosensitive K+ channel histidine kinase; InterPro IPR019734:IPR003594; KEGG: bfs:BF2281 putative two component system sensor histidine kinase; PFAM: ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain; Tetratricopeptide repeat; SPTR: Putative uncharacterized protein; IMG reference gene:2504107726; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
     0.740
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
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