STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcop_0748Tetratricopeptide TPR_1 repeat-containing protein; COGs: COG0507 ATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase superfamily I member; InterPro IPR001440:IPR003593:IPR019734; KEGG: bfs:BF0909 putative helicase protein; PFAM: Tetratricopeptide TPR-1; SMART: ATPase, AAA+ type, core; Tetratricopeptide repeat; SPTR: Putative uncharacterized protein; IMG reference gene:2504106436; PFAM: PIF1 helicase; Tetratricopeptide repeat. (666 aa)    
Predicted Functional Partners:
Bcop_0749
COGs: COG0561 hydrolase of the HAD superfamily; InterPro IPR013200:IPR000150:IPR006379; KEGG: bth:BT_4131 hypothetical protein; PFAM: HAD superfamily hydrolase-like, type 3; SPTR: Putative uncharacterized protein; TIGRFAM: Cof protein; HAD-superfamily hydrolase, subfamily IIB; IMG reference gene:2504106437; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily; HAD-superfamily hydrolase, subfamily IIB.
       0.844
Bcop_0747
KEGG: bfs:BF0908 putative outer membrane protein; SPTR: Putative outer membrane protein; IMG reference gene:2504106435; PFAM: AsmA family.
     
 0.813
Bcop_0746
Sua5/YciO/YrdC/YwlC family protein; COGs: COG0009 Putative translation factor (SUA5); InterPro IPR006070:IPR004388; KEGG: bth:BT_4128 hypothetical protein; PFAM: Sua5/YciO/YrdC, N-terminal; SPTR: Putative uncharacterized protein; TIGRFAM: Sua5/YciO/YrdC/YwlC; IMG reference gene:2504106434; PFAM: yrdC domain; TIGRFAM: Sua5/YciO/YrdC/YwlC family protein.
  
 
 0.697
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.662
dnaK
Chaperone protein dnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.642
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
  
  0.641
Bcop_1426
COGs: COG0013 Alanyl-tRNA synthetase; InterPro IPR012947; KEGG: bfr:BF2624 alanyl-tRNA synthetase; PFAM: Threonyl/alanyl tRNA synthetase, SAD; SMART: Threonyl/alanyl tRNA synthetase, SAD; SPTR: Putative alanyl-tRNA synthetase; IMG reference gene:2504107135; PFAM: Threonyl and Alanyl tRNA synthetase second additional domain.
  
  0.641
Bcop_1646
KEGG: pdi:BDI_0754 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504107362.
  
 0.637
prfA
Peptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.
  
  0.616
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.614
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
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