STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcop_0767Alpha-galactosidase; KEGG: bfs:BF0845 ATP/GTP-binding site; PRIAM: Alpha-galactosidase; SPTR: Alpha-1,3-galactosidase B; IMG reference gene:2504106455. (594 aa)    
Predicted Functional Partners:
Bcop_0450
KEGG: bvu:BVU_0830 hypothetical protein; SPTR: Putative lipoprotein; IMG reference gene:2504106114; PFAM: OmpW family.
  
    0.626
Bcop_0821
COGs: COG4409 Neuraminidase (sialidase); KEGG: bfs:BF4051 putative neuraminidase; SPTR: Putative uncharacterized protein; IMG reference gene:2504106510; PFAM: BNR/Asp-box repeat.
  
     0.595
Bcop_1384
KEGG: lby:Lbys_2826 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504107093.
  
     0.570
Bcop_1627
KEGG: cpi:Cpin_1894 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504107342.
  
 
   0.569
Bcop_1055
COGs: COG1835 acyltransferase; InterPro IPR002656; KEGG: dfe:Dfer_1632 acyltransferase 3; PFAM: Acyltransferase 3; SPTR: Putative uncharacterized protein; IMG reference gene:2504106757; PFAM: Acyltransferase family.
  
     0.545
Bcop_1410
Coagulation factor 5/8 type domain protein; COGs: COG3669 Alpha-L-fucosidase; InterPro IPR000933:IPR000421; KEGG: bvu:BVU_0535 alpha-L-fucosidase; PFAM: Coagulation factor 5/8 type, C-terminal; Glycoside hydrolase, family 29; SMART: Glycoside hydrolase, family 29; SPTR: Putative uncharacterized protein; IMG reference gene:2504107119; PFAM: F5/8 type C domain; Alpha-L-fucosidase.
 
 
  0.523
Bcop_0766
PhoH family protein; COGs: COG1702 Phosphate starvation-inducible protein PhoH predicted ATPase; InterPro IPR003714; KEGG: bfs:BF0841 putative phosphate starvation-inducible PhoH-like protein; PFAM: PhoH-like protein; SPTR: Phosphate starvation-inducible protein PhoH; IMG reference gene:2504106454; PFAM: PhoH-like protein.
       0.496
Bcop_0732
Glycoside hydrolase family 29 (alpha-L-fucosidase); COGs: COG3669 Alpha-L-fucosidase; InterPro IPR000933; KEGG: bfs:BF3242 putative exported alpha-L-fucosidase protein; PFAM: Glycoside hydrolase, family 29; SMART: Glycoside hydrolase, family 29; SPTR: Putative uncharacterized protein; IMG reference gene:2504106420; PFAM: Alpha-L-fucosidase.
  
 
  0.493
Bcop_0541
Metallophosphoesterase; COGs: COG1520 FOG: WD40-like repeat; InterPro IPR018391:IPR004843:IPR002372; KEGG: bfs:BF0376 putative PQQ-binding exported phosphoesterase; PFAM: Metallo-dependent phosphatase; Pyrrolo-quinoline quinone repeat; SMART: Pyrrolo-quinoline quinone beta-propeller repeat; SPTR: Putative uncharacterized protein; IMG reference gene:2504106215; PFAM: Calcineurin-like phosphoesterase; PQQ enzyme repeat.
  
  
 0.472
Bcop_0028
Cell division protein FtsK/SpoIIIE; COGs: COG1674 DNA segregation ATPase FtsK/SpoIIIE and related protein; InterPro IPR002543:IPR018541; KEGG: bfr:BF1033 FtsK/SpoIIIE family cell division protein; PFAM: Cell divisionFtsK/SpoIIIE; DNA translocase FtsK gamma; SMART: DNA translocase FtsK gamma; SPTR: Putative uncharacterized protein; IMG reference gene:2504105683; PFAM: Ftsk gamma domain; FtsK/SpoIIIE family.
    
   0.470
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
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