STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcop_0772Glycoside hydrolase family 37; COGs: COG3408 Glycogen debranching protein; InterPro IPR001661; KEGG: bvu:BVU_1364 glycoside hydrolase family protein; PFAM: Glycoside hydrolase, family 37; SPTR: Putative uncharacterized protein; IMG reference gene:2504106460; PFAM: Trehalase. (649 aa)    
Predicted Functional Partners:
Bcop_0771
Glycoside hydrolase family 2 TIM barrel; COGs: COG3250 Beta-galactosidase/beta-glucuronidase; InterPro IPR006104:IPR006102:IPR006103:IPR004199; KEGG: bvu:BVU_1365 glycoside hydrolase family protein; PFAM: Glycoside hydrolase, family 2, TIM barrel; Glycoside hydrolase, family 2, carbohydrate-binding; Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich; Glycoside hydrolase, family 42, domain 5; SPTR: Glycoside hydrolase family 2 protein; IMG reference gene:2504106459; PFAM: domain; Glycosyl hydrolases family 2, TIM barrel domain; Glycosyl hydrolases family 2, sugar binding d [...]
 
   
 0.853
Bcop_0883
COGs: COG0058 Glucan phosphorylase; InterPro IPR000811:IPR011834; KEGG: bth:BT_1293 alpha-glucan phosphorylase; PFAM: Glycosyl transferase, family 35; PRIAM: Phosphorylase; SPTR: Maltodextrin phosphorylase; TIGRFAM: Alpha-glucan phosphorylase; IMG reference gene:2504106578; PFAM: Carbohydrate phosphorylase; Protein of unknown function (DUF3417); TIGRFAM: alpha-glucan phosphorylases.
  
 0.809
Bcop_0770
RagB/SusD domain-containing protein; InterPro IPR012944; KEGG: bvu:BVU_1368 hypothetical protein; PFAM: RagB/SusD; SPTR: Putative uncharacterized protein; IMG reference gene:2504106458; PFAM: SusD family.
 
     0.727
Bcop_1343
Alpha amylase catalytic region; COGs: COG0296 1 4-alpha-glucan branching enzyme; InterPro IPR004193:IPR006047:IPR006589; KEGG: sli:Slin_0361 alpha amylase catalytic region; PFAM: Glycosyl hydrolase, family 13, catalytic domain; Glycoside hydrolase, family 13, N-terminal; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic domain; SPTR: Putative alpha-amylase; IMG reference gene:2504107052; PFAM: Alpha amylase, catalytic domain; Belongs to the glycosyl hydrolase 13 family.
  
 
 0.564
Bcop_1391
COGs: COG0296 1 4-alpha-glucan branching enzyme; InterPro IPR004193:IPR006047:IPR006048:IPR006589; KEGG: bfs:BF2338 putative hydrolase; PFAM: Alpha-amylase, C-terminal all beta; Glycosyl hydrolase, family 13, catalytic domain; Glycoside hydrolase, family 13, N-terminal; PRIAM: 1,4-alpha-glucan branching enzyme; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic domain; SPTR: Putative uncharacterized protein; IMG reference gene:2504107100; PFAM: Alpha amylase, C-terminal all-beta domain; Carbohydrate-binding module 48 (Isoamylase N-terminal domain); Alpha amylase, catalytic domain.
  
 
 0.564
Bcop_0777
Protein of unknown function DUF340 membrane; COGs: COG2431 membrane protein; InterPro IPR005642; KEGG: bfr:BF3876 hypothetical protein; PFAM: Protein of unknown function DUF340, prokaryotic membrane; SPTR: Putative membrane protein; IMG reference gene:2504106465; PFAM: Membrane protein of unknown function (DUF340).
       0.542
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
   
   0.533
Bcop_0769
TonB-dependent receptor plug; COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: bvu:BVU_1369 hypothetical protein; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent outer membrane receptor; IMG reference gene:2504106457; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family.
 
     0.526
Bcop_2154
Kojibiose phosphorylase; COGs: COG1554 Trehalose and maltose hydrolase (possible phosphorylase); InterPro IPR005195; KEGG: fjo:Fjoh_4428 glycoside hydrolase family protein; PFAM: Glycoside hydrolase, family 65, central catalytic; PRIAM: Kojibiose phosphorylase; SPTR: Candidate alpha glycoside phosphorylase; Glycoside hydrolase family 65; IMG reference gene:2504107875; PFAM: Glycosyl hydrolase family 65, N-terminal domain; Glycosyl hydrolase family 65 central catalytic domain.
  
 
  0.498
Bcop_0428
COGs: COG0469 Pyruvate kinase; InterPro IPR015793:IPR015795:IPR001697; KEGG: bfs:BF4277 pyruvate kinase; PFAM: Pyruvate kinase, barrel; Pyruvate kinase, C-terminal-like; PRIAM: Pyruvate kinase; SPTR: Pyruvate kinase; TIGRFAM: Pyruvate kinase; IMG reference gene:2504106091; PFAM: Pyruvate kinase, barrel domain; Pyruvate kinase, alpha/beta domain; TIGRFAM: pyruvate kinase; Belongs to the pyruvate kinase family.
   
 0.454
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.