STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcop_0776KEGG: bfr:BF3875 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106464; PFAM: Membrane protein of unknown function (DUF340). (93 aa)    
Predicted Functional Partners:
Bcop_0777
Protein of unknown function DUF340 membrane; COGs: COG2431 membrane protein; InterPro IPR005642; KEGG: bfr:BF3876 hypothetical protein; PFAM: Protein of unknown function DUF340, prokaryotic membrane; SPTR: Putative membrane protein; IMG reference gene:2504106465; PFAM: Membrane protein of unknown function (DUF340).
 
    0.946
Bcop_0118
Protein of unknown function DUF340 membrane; COGs: COG2431 membrane protein; InterPro IPR005642; KEGG: bth:BT_2177 hypothetical protein; PFAM: Protein of unknown function DUF340, prokaryotic membrane; SPTR: Putative membrane protein; IMG reference gene:2504105774; PFAM: Membrane protein of unknown function (DUF340).
 
    0.745
Bcop_0029
KEGG: bfs:BF0949 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504105684.
  
     0.727
Bcop_0072
KEGG: bfs:BF3529 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504105727.
  
     0.719
Bcop_0259
KEGG: bth:BT_3454 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504105918.
  
     0.719
Bcop_0876
KEGG: bvu:BVU_3566 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106571; PFAM: Protein of unknown function (DUF2764).
  
     0.683
Bcop_0702
KEGG: bfs:BF0700 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106383.
  
     0.680
Bcop_1914
KEGG: pdi:BDI_3527 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504107630; PFAM: OmpA family.
  
     0.611
Bcop_2193
KEGG: bth:BT_0315 hypothetical protein; SPTR: Predicted protein; IMG reference gene:2504107914.
  
     0.605
Bcop_0676
KEGG: bfs:BF0656 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106356.
  
     0.577
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
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