STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcop_0779COGs: COG3250 Beta-galactosidase/beta-glucuronidase; InterPro IPR006104:IPR006102:IPR006103:IPR004199; KEGG: bth:BT_4241 beta-galactosidase; PFAM: Glycoside hydrolase, family 2, TIM barrel; Glycoside hydrolase, family 2, carbohydrate-binding; Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich; Glycoside hydrolase, family 42, domain 5; PRIAM: Beta-galactosidase; SPTR: Putative uncharacterized protein; IMG reference gene:2504106467; PFAM: domain; Glycosyl hydrolases family 2, TIM barrel domain; Glycosyl hydrolases family 2, sugar binding domain; Beta galactosidase small chain. (1108 aa)    
Predicted Functional Partners:
Bcop_2220
Glycoside hydrolase family 2 TIM barrel; COGs: COG3250 Beta-galactosidase/beta-glucuronidase; InterPro IPR006104:IPR006102:IPR006103:IPR004199; KEGG: bfr:BF0736 beta-galactosidase; PFAM: Glycoside hydrolase, family 2, TIM barrel; Glycoside hydrolase, family 2, carbohydrate-binding; Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich; Glycoside hydrolase, family 42, domain 5; SPTR: Putative uncharacterized protein; IMG reference gene:2504107941; PFAM: domain; Glycosyl hydrolases family 2, TIM barrel domain; Glycosyl hydrolases family 2, sugar binding domain; Beta galactosid [...]
  
  
 
0.790
Bcop_1219
COGs: COG3250 Beta-galactosidase/beta-glucuronidase; InterPro IPR006104:IPR006102:IPR006103; KEGG: ote:Oter_1355 glycoside hydrolase family protein; PFAM: Glycoside hydrolase, family 2, carbohydrate-binding; Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich; Glycoside hydrolase, family 2, TIM barrel; PRIAM: Beta-galactosidase; SPTR: Glycoside hydrolase family 2 sugar binding; IMG reference gene:2504106922; PFAM: domain; Glycosyl hydrolases family 2, TIM barrel domain; Glycosyl hydrolases family 2, sugar binding domain.
  
 
 
0.744
Bcop_2177
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
 
 
 0.710
Bcop_0619
Glucokinase; COGs: COG1940 Transcriptional regulator/sugar kinase; InterPro IPR000600; KEGG: bth:BT_2493 ROK family transcriptional repressor; PFAM: ROK; PRIAM: Glucokinase; SPTR: Putative uncharacterized protein; IMG reference gene:2504106297; PFAM: ROK family; TIGRFAM: ROK family protein (putative glucokinase).
     
 0.637
Bcop_0780
Alpha-N-acetylgalactosaminidase; COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683; KEGG: bvu:BVU_0340 putative oxidoreductase; PFAM: Oxidoreductase, N-terminal; PRIAM: Alpha-N-acetylgalactosaminidase; SPTR: Oxidoreductase; IMG reference gene:2504106468; PFAM: Oxidoreductase family, NAD-binding Rossmann fold.
 
  
 0.627
Bcop_0822
Conserved hypothetical protein CHP00022; COGs: COG2731 Beta-galactosidase beta subunit; InterPro IPR004375; KEGG: bfr:BF1709 hypothetical protein; PFAM: Conserved hypothetical protein CHP00022; SPTR: Putative uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP00022; IMG reference gene:2504106511; PFAM: Domain of unknown function (DUF386); TIGRFAM: uncharacterized protein, YhcH/YjgK/YiaL family.
   
  0.603
Bcop_1410
Coagulation factor 5/8 type domain protein; COGs: COG3669 Alpha-L-fucosidase; InterPro IPR000933:IPR000421; KEGG: bvu:BVU_0535 alpha-L-fucosidase; PFAM: Coagulation factor 5/8 type, C-terminal; Glycoside hydrolase, family 29; SMART: Glycoside hydrolase, family 29; SPTR: Putative uncharacterized protein; IMG reference gene:2504107119; PFAM: F5/8 type C domain; Alpha-L-fucosidase.
 
   
 0.597
Bcop_1319
Glucan endo-1,6-beta-glucosidase; COGs: COG5520 O-Glycosyl hydrolase; InterPro IPR001139; KEGG: pdi:BDI_1787 beta-glycosidase; PFAM: Glycoside hydrolase, family 30; PRIAM: Glucan endo-1,6-beta-glucosidase; SPTR: Putative uncharacterized protein; IMG reference gene:2504107027; PFAM: O-Glycosyl hydrolase family 30; Belongs to the glycosyl hydrolase 30 family.
   
 
  0.554
Bcop_1320
Glucan endo-1,6-beta-glucosidase; COGs: COG5520 O-Glycosyl hydrolase; InterPro IPR001139; KEGG: zpr:ZPR_4392 glycoside hydrolase family 30; PFAM: Glycoside hydrolase, family 30; PRIAM: Glucan endo-1,6-beta-glucosidase; SPTR: Glycoside hydrolase family 30; IMG reference gene:2504107028; PFAM: O-Glycosyl hydrolase family 30; Belongs to the glycosyl hydrolase 30 family.
   
 
  0.554
Bcop_1370
Glucokinase; COGs: COG1940 Transcriptional regulator/sugar kinase; InterPro IPR000600; KEGG: bth:BT_4654 ROK family transcriptional repressor; PFAM: ROK; PRIAM: Glucokinase; SPTR: Glucokinase; IMG reference gene:2504107079; PFAM: ROK family; TIGRFAM: ROK family protein (putative glucokinase).
     
 0.543
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
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