STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Coexpression
Experiments
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[Homology]
Score
Bcop_0780Alpha-N-acetylgalactosaminidase; COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683; KEGG: bvu:BVU_0340 putative oxidoreductase; PFAM: Oxidoreductase, N-terminal; PRIAM: Alpha-N-acetylgalactosaminidase; SPTR: Oxidoreductase; IMG reference gene:2504106468; PFAM: Oxidoreductase family, NAD-binding Rossmann fold. (470 aa)    
Predicted Functional Partners:
Bcop_2179
Galactokinase; COGs: COG0153 Galactokinase; InterPro IPR000705:IPR019539:IPR006204:IPR013750; KEGG: bfs:BF1661 putative galactokinase; PFAM: Galactokinase galactose-binding domain; GHMP kinase; GHMP kinase, C-terminal; PRIAM: Galactokinase; SPTR: Putative uncharacterized protein; TIGRFAM: Galactokinase; IMG reference gene:2504107900; PFAM: Galactokinase galactose-binding signature; GHMP kinases C terminal; GHMP kinases N terminal domain; TIGRFAM: galactokinase; Belongs to the GHMP kinase family. GalK subfamily.
 
 0.651
Bcop_0375
Aminoglycoside phosphotransferase; InterPro IPR002575; KEGG: bth:BT_4240 hypothetical protein; PFAM: Aminoglycoside phosphotransferase; SPTR: Putative uncharacterized protein; IMG reference gene:2504106037; PFAM: Phosphotransferase enzyme family.
 
     0.643
Bcop_0779
COGs: COG3250 Beta-galactosidase/beta-glucuronidase; InterPro IPR006104:IPR006102:IPR006103:IPR004199; KEGG: bth:BT_4241 beta-galactosidase; PFAM: Glycoside hydrolase, family 2, TIM barrel; Glycoside hydrolase, family 2, carbohydrate-binding; Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich; Glycoside hydrolase, family 42, domain 5; PRIAM: Beta-galactosidase; SPTR: Putative uncharacterized protein; IMG reference gene:2504106467; PFAM: domain; Glycosyl hydrolases family 2, TIM barrel domain; Glycosyl hydrolases family 2, sugar binding domain; Beta galactosidase small chain.
 
  
  0.626
Bcop_1410
Coagulation factor 5/8 type domain protein; COGs: COG3669 Alpha-L-fucosidase; InterPro IPR000933:IPR000421; KEGG: bvu:BVU_0535 alpha-L-fucosidase; PFAM: Coagulation factor 5/8 type, C-terminal; Glycoside hydrolase, family 29; SMART: Glycoside hydrolase, family 29; SPTR: Putative uncharacterized protein; IMG reference gene:2504107119; PFAM: F5/8 type C domain; Alpha-L-fucosidase.
  
     0.597
Bcop_0290
Beta-N-acetylhexosaminidase; COGs: COG3525 N-acetyl-beta-hexosaminidase; InterPro IPR015882:IPR015883:IPR000421; KEGG: bvu:BVU_4138 beta-N-acetylhexosaminidase; PFAM: Glycoside hydrolase, family 20, catalytic core; Acetylhexosaminidase, subunit a/b; Coagulation factor 5/8 type, C-terminal; PRIAM: Beta-N-acetylhexosaminidase; SPTR: Glycoside hydrolase family 20, candidate beta-N-acetylhexosaminidase; IMG reference gene:2504105951; PFAM: F5/8 type C domain; Glycosyl hydrolase family 20, catalytic domain; Glycosyl hydrolase family 20, domain 2.
  
     0.535
Bcop_1603
Hypothetical protein; InterPro IPR013954; KEGG: pan:PODANSg1088 hypothetical protein; SPTR: Predicted CDS Pa_5_2490; IMG reference gene:2504107318; PFAM: Polynucleotide kinase 3 phosphatase; TIGRFAM: DNA 3'-phosphatase; HAD-superfamily hydrolase, subfamily IIIA.
  
 
 0.490
lysS
COGs: COG1190 Lysyl-tRNA synthetase (class II); HAMAP: Lysyl-tRNA synthetase, class II; InterPro IPR002313:IPR004365:IPR004364; KEGG: bfs:BF3602 lysyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type; PRIAM: Lysine--tRNA ligase; SPTR: Putative lysyl-tRNA synthetase, heat inducible; TIGRFAM: Lysyl-tRNA synthetase, class II; IMG reference gene:2504108182; PFAM: tRNA synthetases class II (D, K and N); OB-fold nucleic acid binding domain; TIGRFAM: lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial; Belongs to [...]
  
    0.485
Bcop_0297
Beta-N-acetylhexosaminidase; COGs: COG3525 N-acetyl-beta-hexosaminidase; InterPro IPR015882:IPR015883; KEGG: bth:BT_0460 beta-hexosaminidase precursor; PFAM: Glycoside hydrolase, family 20, catalytic core; Acetylhexosaminidase, subunit a/b; PRIAM: Beta-N-acetylhexosaminidase; SPTR: Beta-hexosaminidase; IMG reference gene:2504105958; PFAM: F5/8 type C domain; Glycosyl hydrolase family 20, catalytic domain; Glycosyl hydrolase family 20, domain 2.
  
    0.481
Bcop_1057
COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR002872:IPR015590; KEGG: bvu:BVU_3604 putative proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydraogenase; PFAM: Aldehyde dehydrogenase domain; Proline dehydrogenase; SPTR: Putative uncharacterized protein; IMG reference gene:2504106759; PFAM: Proline dehydrogenase; Aldehyde dehydrogenase family.
   
 0.472
Bcop_2329
Beta-N-acetylhexosaminidase; COGs: COG3525 N-acetyl-beta-hexosaminidase; InterPro IPR015883:IPR011658; KEGG: bth:BT_0506 beta-hexosaminidase precursor; PFAM: Glycoside hydrolase, family 20, catalytic core; PRIAM: Beta-N-acetylhexosaminidase; SMART: PA14; SPTR: PA14 domain protein; IMG reference gene:2504108060; PFAM: Glycosyl hydrolase family 20, catalytic domain; PA14 domain.
  
     0.464
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
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