STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcop_0787Heavy metal translocating P-type ATPase; COGs: COG2217 Cation transport ATPase; InterProIPR008250:IPR005834:IPR006416:IPR006404:IPR 001757; KEGG: gfo:GFO_0024 heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase; PFAM: ATPase, P-type, ATPase-associated domain; Haloacid dehalogenase-like hydrolase; PRIAM: Cadmium-exporting ATPase; SPTR: Heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase; TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P-type, heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; IMG reference gene:2504106 [...] (673 aa)    
Predicted Functional Partners:
Bcop_0786
Putative transcriptional regulator; COGs: COG0735 Fe2+/Zn2+ uptake regulation protein; KEGG: bvu:BVU_2483 putative transcriptional regulator; SPTR: Putative uncharacterized protein; IMG reference gene:2504106474; PFAM: Ferric uptake regulator family; Belongs to the Fur family.
 
   
 0.872
Bcop_0645
Transcriptional regulator, AraC family; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR000005:IPR018060; KEGG: cat:CA2559_00255 putative regulatory protein; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain; SPTR: Regulator with DNA binding domain protein; IMG reference gene:2504106324; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family.
 
 
 0.814
Bcop_2022
Efflux transporter, RND family, MFP subunit; COGs: COG0845 Membrane-fusion protein; InterPro IPR006143:IPR006121; KEGG: bfs:BF3365 putative metal transport-related, exported protein; PFAM: Heavy metal transport/detoxification protein; SPTR: Putative uncharacterized protein; TIGRFAM: Secretion protein HlyD; IMG reference gene:2504107741; PFAM: Heavy-metal-associated domain; TIGRFAM: RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 
 0.744
Bcop_0185
COGs: COG1538 Outer membrane protein; KEGG: fbc:FB2170_10631 putative transport-related membrane protein; SPTR: Cation efflux protein; IMG reference gene:2504105842; PFAM: Outer membrane efflux protein.
 
  
 0.496
Bcop_2386
COGs: COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase alpha subunit; InterProIPR011895:IPR002880:IPR019752:IPR019456:IPR 001450:IPR011766; KEGG: bth:BT_1747 pyruvate-flavodoxin oxidoreductase; PFAM: Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal; Pyruvate/ketoisovalerate oxidoreductase, catalytic domain; Pyruvate-flavodoxin oxidoreductase, EKR domain; 4Fe-4S binding domain; Thiamine pyrophosphate enzyme, C-terminal TPP-binding; PRIAM: Pyruvate dehydrogenase (NADP(+)); SMART: Pyruvate-flavodoxin oxidoreductase, EKR domain; SPTR: Pyru [...]
  
  
 0.445
obg
GTPase obg; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family.
       0.439
Bcop_0784
Multi-copper polyphenol oxidoreductase, laccase; COGs: COG1496 conserved hypothetical protein; InterPro IPR003730; KEGG: bfr:BF1122 hypothetical protein; PFAM: Multi-copper polyphenol oxidoreductase, laccase; SPTR: Putative uncharacterized protein; TIGRFAM: Multi-copper polyphenol oxidoreductase, laccase; manually curated; IMG reference gene:2504106472; PFAM: Multi-copper polyphenol oxidoreductase laccase; TIGRFAM: uncharacterized protein, YfiH family; Belongs to the multicopper oxidase YfiH/RL5 family.
       0.439
Bcop_0785
B3/4 domain protein; COGs: COG3382 conserved hypothetical protein; InterPro IPR005146; KEGG: bfs:BF1035 hypothetical protein; PFAM: B3/B4 tRNA-binding domain; SMART: B3/B4 tRNA-binding domain; SPTR: Putative uncharacterized protein; IMG reference gene:2504106473; PFAM: B3/4 domain.
       0.439
Bcop_2120
Tetracycline regulation of excision, RteC; InterPro IPR018534; KEGG: pgn:PGN_0080 probable tetracycline resistance element mobilization regulatory protein RteC; PFAM: Tetracycline regulation of excision, RteC; SPTR: Probable tetracycline resistance element mobilization regulatory protein RteC; IMG reference gene:2504107841; PFAM: RteC protein.
  
     0.415
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
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