STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcop_0806KEGG: bfs:BF3043 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106495. (167 aa)    
Predicted Functional Partners:
Bcop_0808
KEGG: bth:BT_0178 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106497; PFAM: Protein of unknown function (DUF1282).
       0.651
smpB
SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...]
       0.630
Bcop_0805
Hypothetical protein; COGs: COG0822 NifU homolog involved in Fe-S cluster formation; KEGG: bfs:BF3045 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106494.
       0.583
Bcop_0804
KEGG: bvu:BVU_2514 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106493.
       0.562
Bcop_0807
KEGG: bvu:BVU_2519 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106496.
       0.527
Bcop_0810
Nucleoside recognition domain protein; InterPro IPR011642; KEGG: pdi:BDI_0414 hypothetical protein; PFAM: Nucleoside recognition; SPTR: Putative transporter gate domain protein; IMG reference gene:2504106499; PFAM: Nucleoside recognition.
       0.480
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
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