STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcop_0841KEGG: bfs:BF2960 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106530. (113 aa)    
Predicted Functional Partners:
Bcop_0842
KEGG: bth:BT_0255 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106531.
       0.844
Bcop_0843
KEGG: bfs:BF2958 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106532.
       0.844
Bcop_0844
Fibronectin type III domain protein; InterPro IPR003961; KEGG: bfs:BF2955 hypothetical protein; PFAM: Fibronectin, type III; SMART: Fibronectin, type III; SPTR: Putative uncharacterized protein; IMG reference gene:2504106533; PFAM: Fibronectin type III domain.
       0.611
Bcop_0840
UPF0313 protein ygiQ; COGs: COG1032 Fe-S oxidoreductase; HAMAP: Uncharacterised protein family UPF0313; InterPro IPR013704:IPR007197:IPR006638:IPR022946; KEGG: bfs:BF2962 hypothetical protein; PFAM: Radical SAM N-terminal; Radical SAM; SMART: Elongator protein 3/MiaB/NifB; SPTR: UPF0313 protein BF3126; IMG reference gene:2504106529; PFAM: Radical SAM superfamily; Radical SAM N-terminal; TIGRFAM: uncharacterized radical SAM protein YgiQ.
       0.528
cutC
Copper homeostasis protein cutC; Participates in the control of copper homeostasis. Belongs to the CutC family.
       0.485
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
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