STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcop_0844Fibronectin type III domain protein; InterPro IPR003961; KEGG: bfs:BF2955 hypothetical protein; PFAM: Fibronectin, type III; SMART: Fibronectin, type III; SPTR: Putative uncharacterized protein; IMG reference gene:2504106533; PFAM: Fibronectin type III domain. (968 aa)    
Predicted Functional Partners:
Bcop_0848
KEGG: bfs:BF3407 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106537.
 
     0.752
Bcop_0539
KEGG: bfr:BF0433 putative glycosyltransferase; SPTR: Putative uncharacterized protein; IMG reference gene:2504106213.
 
     0.731
Bcop_0540
COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: bfr:BF0434 putative glycosyltransferase; PFAM: Glycosyl transferase, family 2; SPTR: Putative glycosyltransferase; IMG reference gene:2504106214; PFAM: Glycosyl transferase family 2.
 
     0.731
Bcop_0843
KEGG: bfs:BF2958 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106532.
       0.722
Bcop_0842
KEGG: bth:BT_0255 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106531.
  
    0.721
Bcop_0538
SpoIID/LytB domain protein; COGs: COG2385 Sporulation protein and related protein; InterPro IPR013693:IPR013486; KEGG: bfs:BF0373 hypothetical protein; PFAM: Sporulation stage II protein D, amidase enhancer LytB N-terminal; SPTR: Putative uncharacterized protein; TIGRFAM: Sporulation stage II protein D, amidase enhancer LytB; IMG reference gene:2504106212; PFAM: Stage II sporulation protein; TIGRFAM: SpoIID/LytB domain.
 
 
 0.645
Bcop_2406
Protein of unknown function DUF1239; InterPro IPR010664; KEGG: bfs:BF0992 hypothetical protein; PFAM: Lipopolysccharide assembly, LptC-related; SPTR: Putative uncharacterized protein; IMG reference gene:2504108138; PFAM: Protein of unknown function (DUF1239).
  
 0.640
Bcop_0729
KEGG: bfs:BF3246 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106417; PFAM: DNA alkylation repair enzyme.
  
    0.636
cutC
Copper homeostasis protein cutC; Participates in the control of copper homeostasis. Belongs to the CutC family.
       0.634
Bcop_0841
KEGG: bfs:BF2960 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106530.
       0.611
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.