STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcop_0876KEGG: bvu:BVU_3566 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106571; PFAM: Protein of unknown function (DUF2764). (281 aa)    
Predicted Functional Partners:
Bcop_0875
KEGG: bth:BT_1301 ATP synthase subunit E; SPTR: ATP synthase subunit; IMG reference gene:2504106570; PFAM: HrpE protein.
 
 0.999
atpA
H+transporting two-sector ATPase alpha/beta subunit central region; Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type alpha chain is a catalytic subunit. Belongs to the ATPase alpha/beta chains family.
 
 0.999
Bcop_0879
COGs: COG1394 H+-ATPase subunit D; InterPro IPR002699; KEGG: bvu:BVU_3563 V-type ATP synthase subunit D; PFAM: ATPase, V1/A1 complex, subunit D; SPTR: V-type ATPase, D subunit; TIGRFAM: ATPase, V1/A1 complex, subunit D; IMG reference gene:2504106574; PFAM: ATP synthase subunit D.
 
 0.999
Bcop_0880
V-type ATPase 116 kDa subunit; COGs: COG1269 H+-ATPase subunit I; InterPro IPR002490; KEGG: bfr:BF2729 V-type ATP synthase subunit I; PFAM: ATPase, V0/A0 complex, 116kDa subunit; SPTR: Putative uncharacterized protein; IMG reference gene:2504106575; PFAM: V-type ATPase 116kDa subunit family; Belongs to the V-ATPase 116 kDa subunit family.
 
 0.999
Bcop_2156
InterPro IPR012944; KEGG: cpi:Cpin_0565 RagB/SusD domain protein; PFAM: RagB/SusD; SPTR: RagB/SusD domain protein; IMG reference gene:2504107877; PFAM: SusD family.
  
 0.999
Bcop_0881
H+transporting two-sector ATPase C subunit; InterPro IPR002379; KEGG: bvu:BVU_3561 V-type ATP synthase subunit K; PFAM: ATPase, F0/V0 complex, subunit C; SPTR: Putative V(Vacuolar)-type Na+-ATP synthase subunit K; IMG reference gene:2504106576; PFAM: ATP synthase subunit C.
 
 0.998
atpE
ATP synthase subunit c; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.
  
 0.990
Bcop_2205
COGs: COG0814 Amino acid permease; InterPro IPR013059:IPR018227; KEGG: aap:NT05HA_1570 low affinity tryptophan permease; PFAM: Tryptophan/tyrosine permease; SPTR: Low affinity tryptophan permease; TIGRFAM: Tryptophan/tyrosine transporter; IMG reference gene:2504107926; PFAM: Tryptophan/tyrosine permease family; TIGRFAM: aromatic amino acid transport protein.
    
 0.794
Bcop_2075
Positive regulator of sigma(E) RseC/MucC; InterPro IPR007359; KEGG: bth:BT_0616 hypothetical protein; PFAM: Positive regulator of sigma(E), RseC/MucC; SPTR: Positive regulator of sigma(E), RseC/MucC superfamily; IMG reference gene:2504107795; PFAM: Positive regulator of sigma(E), RseC/MucC.
  
     0.732
Bcop_0776
KEGG: bfr:BF3875 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106464; PFAM: Membrane protein of unknown function (DUF340).
  
     0.683
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
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