STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcop_0887COGs: COG4771 Outer membrane receptor for ferrienterochelin and colicins; InterPro IPR012910:IPR000531; KEGG: bfr:BF2675 TonB-dependent outer membrane receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent outer membrane receptor; IMG reference gene:2504106582; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor. (769 aa)    
Predicted Functional Partners:
Bcop_0886
KEGG: bfs:BF2698 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106581.
  
    0.588
Bcop_2013
Hypothetical protein; KEGG: bfr:BF3031 putative cell wall biogenesis protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504107732.
  
 
   0.575
Bcop_0149
TonB family protein; InterPro IPR006260; KEGG: bfs:BF3737 putative TonB exported protein; SPTR: Putative TonB exported protein; TIGRFAM: TonB, C-terminal; IMG reference gene:2504105805; PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain.
  
   0.564
Bcop_0076
TonB family protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
   0.555
Bcop_0071
InterPro IPR003400; KEGG: bfs:BF3528 hypothetical protein; PFAM: Biopolymer transport protein ExbD/TolR; SPTR: Putative uncharacterized protein; IMG reference gene:2504105726; PFAM: Biopolymer transport protein ExbD/TolR; overlaps another CDS with the same product name.
  
    0.513
Bcop_2402
KEGG: bth:BT_4373 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504108134.
  
     0.503
Bcop_2407
KEGG: bfs:BF0991 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504108139.
  
    0.491
Bcop_0073
MotA/TolQ/ExbB proton channel; COGs: COG0811 Biopolymer transport protein; InterPro IPR002898; KEGG: bth:BT_2055 putative biopolymer transport protein; PFAM: MotA/TolQ/ExbB proton channel; SPTR: Putative uncharacterized protein; IMG reference gene:2504105728; PFAM: MotA/TolQ/ExbB proton channel family.
  
    0.490
Bcop_1454
COGs: COG0810 Periplasmic protein TonB links inner and outer membranes; InterPro IPR006260:IPR008756; KEGG: pru:PRU_2128 TonB family protein; PFAM: TonB, C-terminal; Peptidase M56, BlaR1; SPTR: Putative uncharacterized protein; TIGRFAM: TonB, C-terminal; IMG reference gene:2504107165; PFAM: BlaR1 peptidase M56; Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain.
  
   0.484
Bcop_0070
InterPro IPR003400; KEGG: bfs:BF3527 hypothetical protein; PFAM: Biopolymer transport protein ExbD/TolR; SPTR: Putative uncharacterized protein; IMG reference gene:2504105725; PFAM: Biopolymer transport protein ExbD/TolR; overlaps another CDS with the same product name.
  
    0.464
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
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