Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bcop_0899Oligopeptide transporter, OPT family; COGs: COG1297 membrane protein; InterPro IPR004813:IPR004814; KEGG: bfs:BF2092 putative transmembrane oligopeptide transporter; PFAM: Oligopeptide transporter OPT superfamily; SPTR: Putative uncharacterized protein; TIGRFAM: Oligopeptide transporter OPT; Oligopeptide transporter OPT superfamily; IMG reference gene:2504106594; PFAM: OPT oligopeptide transporter protein; TIGRFAM: putative oligopeptide transporter, OPT family; oligopeptide transporters, OPT superfamily. (665 aa)    
Predicted Functional Partners:
Bcop_0898
Protein of unknown function DUF1460; InterPro IPR010846; KEGG: bth:BT_1087 putative xylanase; PFAM: Protein of unknown function DUF1460; SPTR: Xylanase; IMG reference gene:2504106593; PFAM: Protein of unknown function (DUF1460).
       0.651
Bcop_2396
Major facilitator superfamily MFS_1; InterPro IPR011701; KEGG: pgi:PG0462 transporter, putative; PFAM: Major facilitator superfamily MFS-1; SPTR: Putative uncharacterized protein; IMG reference gene:2504108128; PFAM: Major Facilitator Superfamily.
  
     0.564
Bcop_0900
Protein of unknown function DUF1573; InterPro IPR011467; KEGG: bfs:BF2093 hypothetical protein; PFAM: Protein of unknown function DUF1573; SPTR: Putative uncharacterized protein; IMG reference gene:2504106595; PFAM: Protein of unknown function (DUF1573).
       0.517
Bcop_0896
COGs: COG5002 Signal transduction histidine kinase; InterPro IPR003661:IPR003594; KEGG: bfr:BF1575 two-component system sensor histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SPTR: Two-component system sensor histidine kinase; IMG reference gene:2504106591; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain.
       0.436
Bcop_0897
Two component transcriptional regulator, winged helix family; COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR001867; KEGG: bfs:BF1590 putative two-component response regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SPTR: Putative uncharacterized protein; IMG reference gene:2504106592; PFAM: Response regulato [...]
       0.436
Bcop_0895
InterPro IPR000866; KEGG: bth:BT_1485 hypothetical protein; PFAM: Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant; SPTR: Putative uncharacterized protein; IMG reference gene:2504106590; PFAM: AhpC/TSA family.
       0.431
Bcop_2253
KEGG: bfs:BF3129 hypothetical protein; SPTR: Putative exported protein; IMG reference gene:2504107974; PFAM: Oxaloacetate decarboxylase, gamma chain.
  
     0.427
Bcop_0901
KEGG: bfs:BF2100 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106596.
       0.402
engB
GTP-binding protein engB; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family.
       0.401
Bcop_0903
COGs: COG0591 Na+/proline symporter; InterPro IPR001734; KEGG: bfr:BF2049 Na+/solute symporter; PFAM: Sodium/solute symporter; SPTR: Sodium:solute symporter family protein; IMG reference gene:2504106598; PFAM: Sodium:solute symporter family; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
       0.401
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
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