STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcop_0903COGs: COG0591 Na+/proline symporter; InterPro IPR001734; KEGG: bfr:BF2049 Na+/solute symporter; PFAM: Sodium/solute symporter; SPTR: Sodium:solute symporter family protein; IMG reference gene:2504106598; PFAM: Sodium:solute symporter family; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. (486 aa)    
Predicted Functional Partners:
Bcop_1057
COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR002872:IPR015590; KEGG: bvu:BVU_3604 putative proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydraogenase; PFAM: Aldehyde dehydrogenase domain; Proline dehydrogenase; SPTR: Putative uncharacterized protein; IMG reference gene:2504106759; PFAM: Proline dehydrogenase; Aldehyde dehydrogenase family.
  
  
 0.968
Bcop_0901
KEGG: bfs:BF2100 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106596.
       0.799
engB
GTP-binding protein engB; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family.
       0.799
Bcop_0900
Protein of unknown function DUF1573; InterPro IPR011467; KEGG: bfs:BF2093 hypothetical protein; PFAM: Protein of unknown function DUF1573; SPTR: Putative uncharacterized protein; IMG reference gene:2504106595; PFAM: Protein of unknown function (DUF1573).
 
     0.657
recR
Recombination protein recR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.
       0.570
Bcop_0905
KEGG: bfs:BF2107 putative transmembrane protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106600.
       0.561
Bcop_0906
GCN5-related N-acetyltransferase; COGs: COG1670 Acetyltransferase including N-acetylase of ribosomal protein; InterPro IPR000182; KEGG: bfs:BF2108 putative acetyltransferase; PFAM: GCN5-related N-acetyltransferase (GNAT) domain; SPTR: Putative acetyltransferase; IMG reference gene:2504106601; PFAM: Acetyltransferase (GNAT) family.
       0.561
Bcop_2400
Sigma54 specific transcriptional regulator, Fis family; COGs: COG3604 Transcriptional regulator containing GAF AAA-type ATPase and DNA binding domains; InterPro IPR002078:IPR002197:IPR003593; KEGG: bfs:BF0998 putative sigma-54 dependent transcriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; Helix-turn-helix, Fis-type; SMART: ATPase, AAA+ type, core; SPTR: Putative uncharacterized protein; IMG reference gene:2504108132; PFAM: Bacterial regulatory protein, Fis family; Sigma-54 interaction domain.
    
 0.547
Bcop_0470
Peptidase S54, rhomboid domain protein; COGs: COG0705 membrane protein; InterPro IPR022764; KEGG: bfs:BF4222 putative transmembrane rhomboid family protein; PFAM: Peptidase S54, rhomboid domain; SPTR: Putative uncharacterized protein; IMG reference gene:2504106137; PFAM: Rhomboid family; overlaps another CDS with the same product name.
  
     0.515
Bcop_1612
Histidine kinase; COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003661:IPR003594:IPR001789; KEGG: bvu:BVU_1552 two-component system sensor histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Signal transduction response regulator, receiver domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Signal transduction response regulator, receiver domain; SPTR: Tetracycline resistance element regulator Rt [...]
     
 0.485
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
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