STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcop_0908Integrase family protein; COGs: COG4974 Site-specific recombinase XerD; InterPro IPR002104; KEGG: bvu:BVU_2470 putative transposase; PFAM: Integrase, catalytic core, phage; SPTR: Putative uncharacterized protein; IMG reference gene:2504106604; PFAM: Phage integrase family; Belongs to the 'phage' integrase family. (410 aa)    
Predicted Functional Partners:
Bcop_0909
KilA-N, DNA-binding domain protein; InterPro IPR018873; KEGG: bfr:BF1341 hypothetical protein; PFAM: KilA-N, DNA-binding domain; SPTR: Putative uncharacterized protein; IMG reference gene:2504106605; PFAM: ORF6N domain.
 
     0.807
Bcop_2120
Tetracycline regulation of excision, RteC; InterPro IPR018534; KEGG: pgn:PGN_0080 probable tetracycline resistance element mobilization regulatory protein RteC; PFAM: Tetracycline regulation of excision, RteC; SPTR: Probable tetracycline resistance element mobilization regulatory protein RteC; IMG reference gene:2504107841; PFAM: RteC protein.
  
     0.654
Bcop_1285
InterPro IPR005094; KEGG: bth:BT_0101 hypothetical protein; PFAM: Endonuclease relaxase, MobA/VirD2; SPTR: Putative mobilisation protein; IMG reference gene:2504106991; PFAM: Relaxase/Mobilisation nuclease domain.
  
     0.617
Bcop_2142
InterPro IPR005094; KEGG: bth:BT_0101 hypothetical protein; PFAM: Endonuclease relaxase, MobA/VirD2; SPTR: Putative uncharacterized protein; IMG reference gene:2504107863; PFAM: Relaxase/Mobilisation nuclease domain.
  
     0.611
Bcop_2121
KEGG: bth:BT_0109 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504107842.
  
     0.602
Bcop_2111
Bacteroides conjugation system ATPase, TraG family; COGs: COG3451 Type IV secretory pathway VirB4 protein; InterPro IPR022509; KEGG: bth:BT_0093 conjugate transposon protein; SPTR: Conserved protein found in conjugate transposon; TIGRFAM: Conjugation system ATPase, TraG; IMG reference gene:2504107832; PFAM: Domain of unknown function DUF87; TIGRFAM: Bacteroides conjugation system ATPase, TraG family.
  
   
 0.577
Bcop_2114
InterPro IPR022276; KEGG: bfs:BF1237 hypothetical protein; SPTR: Conjugative transposon TraK protein; TIGRFAM: Conjugative transposon, TraK; IMG reference gene:2504107835; TIGRFAM: Bacteroides conjugative transposon TraK protein.
  
    0.565
Bcop_2113
InterPro IPR022393:IPR012424; KEGG: bfr:BF1355 conjugate transposon protein; PFAM: Conjugative transposon, TraJ, C-terminal; SPTR: Putative uncharacterized protein; TIGRFAM: Conjugative transposon, TraJ; IMG reference gene:2504107834; PFAM: homologs of TraJ from Bacteroides conjugative transposon; TIGRFAM: Bacteroides conjugative transposon TraJ protein.
  
     0.558
Bcop_2117
Bacteroides conjugative transposon TraN protein; InterPro IPR022298; KEGG: bfs:BF1234 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: Conjugative transposon, TraN; IMG reference gene:2504107838; TIGRFAM: Bacteroides conjugative transposon TraN protein.
  
     0.557
Bcop_2118
Conjugative transposon protein TraO; InterPro IPR018899; KEGG: bfs:BF1233 hypothetical protein; PFAM: Conjugative transposon, TraO; SPTR: Putative uncharacterized protein; IMG reference gene:2504107839; PFAM: Conjugative transposon protein TraO.
  
     0.547
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
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