node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Bcop_0202 | Bcop_0931 | Bcop_0202 | Bcop_0931 | COGs: COG0514 Superfamily II DNA helicase; InterProIPR006293:IPR004589:IPR011545:IPR001650:IPR 018982:IPR002121:IPR014001; KEGG: bfs:BF3892 putative ATP-dependent DNA helicase; PFAM: RQC domain; Helicase, C-terminal; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase/RNase D C-terminal, HRDC domain; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; RQC domain; Helicase/RNase D C-terminal, HRDC domain; SPTR: ATP-dependent DNA helicase RecQ; TIGRFAM: DNA helicase, ATP-dependent, RecQ type, bacterial; DNA helicase, ATP-dependent, RecQ type; IMG reference gene:2504105861 [...] | UvrD/REP helicase; COGs: COG0210 Superfamily I DNA and RNA helicase; InterPro IPR000212; KEGG: bfs:BF2555 putative helicase; PFAM: DNA helicase, UvrD/REP type; SPTR: Putative uncharacterized protein; IMG reference gene:2504106627; PFAM: UvrD/REP helicase. | 0.678 |
Bcop_0202 | Bcop_0975 | Bcop_0202 | Bcop_0975 | COGs: COG0514 Superfamily II DNA helicase; InterProIPR006293:IPR004589:IPR011545:IPR001650:IPR 018982:IPR002121:IPR014001; KEGG: bfs:BF3892 putative ATP-dependent DNA helicase; PFAM: RQC domain; Helicase, C-terminal; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase/RNase D C-terminal, HRDC domain; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; RQC domain; Helicase/RNase D C-terminal, HRDC domain; SPTR: ATP-dependent DNA helicase RecQ; TIGRFAM: DNA helicase, ATP-dependent, RecQ type, bacterial; DNA helicase, ATP-dependent, RecQ type; IMG reference gene:2504105861 [...] | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.643 |
Bcop_0202 | polA | Bcop_0202 | Bcop_0354 | COGs: COG0514 Superfamily II DNA helicase; InterProIPR006293:IPR004589:IPR011545:IPR001650:IPR 018982:IPR002121:IPR014001; KEGG: bfs:BF3892 putative ATP-dependent DNA helicase; PFAM: RQC domain; Helicase, C-terminal; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase/RNase D C-terminal, HRDC domain; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; RQC domain; Helicase/RNase D C-terminal, HRDC domain; SPTR: ATP-dependent DNA helicase RecQ; TIGRFAM: DNA helicase, ATP-dependent, RecQ type, bacterial; DNA helicase, ATP-dependent, RecQ type; IMG reference gene:2504105861 [...] | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.868 |
Bcop_0202 | recA | Bcop_0202 | Bcop_2228 | COGs: COG0514 Superfamily II DNA helicase; InterProIPR006293:IPR004589:IPR011545:IPR001650:IPR 018982:IPR002121:IPR014001; KEGG: bfs:BF3892 putative ATP-dependent DNA helicase; PFAM: RQC domain; Helicase, C-terminal; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase/RNase D C-terminal, HRDC domain; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; RQC domain; Helicase/RNase D C-terminal, HRDC domain; SPTR: ATP-dependent DNA helicase RecQ; TIGRFAM: DNA helicase, ATP-dependent, RecQ type, bacterial; DNA helicase, ATP-dependent, RecQ type; IMG reference gene:2504105861 [...] | Protein recA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.793 |
Bcop_0202 | topA | Bcop_0202 | Bcop_0439 | COGs: COG0514 Superfamily II DNA helicase; InterProIPR006293:IPR004589:IPR011545:IPR001650:IPR 018982:IPR002121:IPR014001; KEGG: bfs:BF3892 putative ATP-dependent DNA helicase; PFAM: RQC domain; Helicase, C-terminal; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase/RNase D C-terminal, HRDC domain; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; RQC domain; Helicase/RNase D C-terminal, HRDC domain; SPTR: ATP-dependent DNA helicase RecQ; TIGRFAM: DNA helicase, ATP-dependent, RecQ type, bacterial; DNA helicase, ATP-dependent, RecQ type; IMG reference gene:2504105861 [...] | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.762 |
Bcop_0726 | Bcop_0931 | Bcop_0726 | Bcop_0931 | COGs: COG0514 Superfamily II DNA helicase; InterProIPR011545:IPR001650:IPR018982:IPR002121:IPR 014001:IPR006293:IPR004589; KEGG: bfs:BF3249 putative ATP-dependent DNA helicase; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; RQC domain; Helicase/RNase D C-terminal, HRDC domain; SMART: RQC domain; DEAD-like helicase, N-terminal; Helicase, C-terminal; Helicase/RNase D C-terminal, HRDC domain; SPTR: ATP-dependent DNA helicase RecQ; TIGRFAM: DNA helicase, ATP-dependent, RecQ type, bacterial; DNA helicase, ATP-dependent, RecQ type; IMG reference gene:2504106414 [...] | UvrD/REP helicase; COGs: COG0210 Superfamily I DNA and RNA helicase; InterPro IPR000212; KEGG: bfs:BF2555 putative helicase; PFAM: DNA helicase, UvrD/REP type; SPTR: Putative uncharacterized protein; IMG reference gene:2504106627; PFAM: UvrD/REP helicase. | 0.694 |
Bcop_0726 | Bcop_0975 | Bcop_0726 | Bcop_0975 | COGs: COG0514 Superfamily II DNA helicase; InterProIPR011545:IPR001650:IPR018982:IPR002121:IPR 014001:IPR006293:IPR004589; KEGG: bfs:BF3249 putative ATP-dependent DNA helicase; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; RQC domain; Helicase/RNase D C-terminal, HRDC domain; SMART: RQC domain; DEAD-like helicase, N-terminal; Helicase, C-terminal; Helicase/RNase D C-terminal, HRDC domain; SPTR: ATP-dependent DNA helicase RecQ; TIGRFAM: DNA helicase, ATP-dependent, RecQ type, bacterial; DNA helicase, ATP-dependent, RecQ type; IMG reference gene:2504106414 [...] | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.643 |
Bcop_0726 | polA | Bcop_0726 | Bcop_0354 | COGs: COG0514 Superfamily II DNA helicase; InterProIPR011545:IPR001650:IPR018982:IPR002121:IPR 014001:IPR006293:IPR004589; KEGG: bfs:BF3249 putative ATP-dependent DNA helicase; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; RQC domain; Helicase/RNase D C-terminal, HRDC domain; SMART: RQC domain; DEAD-like helicase, N-terminal; Helicase, C-terminal; Helicase/RNase D C-terminal, HRDC domain; SPTR: ATP-dependent DNA helicase RecQ; TIGRFAM: DNA helicase, ATP-dependent, RecQ type, bacterial; DNA helicase, ATP-dependent, RecQ type; IMG reference gene:2504106414 [...] | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.868 |
Bcop_0726 | recA | Bcop_0726 | Bcop_2228 | COGs: COG0514 Superfamily II DNA helicase; InterProIPR011545:IPR001650:IPR018982:IPR002121:IPR 014001:IPR006293:IPR004589; KEGG: bfs:BF3249 putative ATP-dependent DNA helicase; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; RQC domain; Helicase/RNase D C-terminal, HRDC domain; SMART: RQC domain; DEAD-like helicase, N-terminal; Helicase, C-terminal; Helicase/RNase D C-terminal, HRDC domain; SPTR: ATP-dependent DNA helicase RecQ; TIGRFAM: DNA helicase, ATP-dependent, RecQ type, bacterial; DNA helicase, ATP-dependent, RecQ type; IMG reference gene:2504106414 [...] | Protein recA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.793 |
Bcop_0726 | topA | Bcop_0726 | Bcop_0439 | COGs: COG0514 Superfamily II DNA helicase; InterProIPR011545:IPR001650:IPR018982:IPR002121:IPR 014001:IPR006293:IPR004589; KEGG: bfs:BF3249 putative ATP-dependent DNA helicase; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; RQC domain; Helicase/RNase D C-terminal, HRDC domain; SMART: RQC domain; DEAD-like helicase, N-terminal; Helicase, C-terminal; Helicase/RNase D C-terminal, HRDC domain; SPTR: ATP-dependent DNA helicase RecQ; TIGRFAM: DNA helicase, ATP-dependent, RecQ type, bacterial; DNA helicase, ATP-dependent, RecQ type; IMG reference gene:2504106414 [...] | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.762 |
Bcop_0930 | Bcop_0931 | Bcop_0930 | Bcop_0931 | Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. | UvrD/REP helicase; COGs: COG0210 Superfamily I DNA and RNA helicase; InterPro IPR000212; KEGG: bfs:BF2555 putative helicase; PFAM: DNA helicase, UvrD/REP type; SPTR: Putative uncharacterized protein; IMG reference gene:2504106627; PFAM: UvrD/REP helicase. | 0.701 |
Bcop_0930 | Bcop_0932 | Bcop_0930 | Bcop_0932 | Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. | COGs: COG0019 Diaminopimelate decarboxylase; InterPro IPR022643:IPR005730; KEGG: bfs:BF2554 putative carboxynorspermidine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2, C-terminal; SPTR: Carboxynorspermidine decarboxylase; TIGRFAM: Carboxynorspermidine decarboxylase; IMG reference gene:2504106628; PFAM: Pyridoxal-dependent decarboxylase, C-terminal sheet domain; TIGRFAM: carboxynorspermidine decarboxylase. | 0.778 |
Bcop_0930 | recA | Bcop_0930 | Bcop_2228 | Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. | Protein recA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.421 |
Bcop_0931 | Bcop_0202 | Bcop_0931 | Bcop_0202 | UvrD/REP helicase; COGs: COG0210 Superfamily I DNA and RNA helicase; InterPro IPR000212; KEGG: bfs:BF2555 putative helicase; PFAM: DNA helicase, UvrD/REP type; SPTR: Putative uncharacterized protein; IMG reference gene:2504106627; PFAM: UvrD/REP helicase. | COGs: COG0514 Superfamily II DNA helicase; InterProIPR006293:IPR004589:IPR011545:IPR001650:IPR 018982:IPR002121:IPR014001; KEGG: bfs:BF3892 putative ATP-dependent DNA helicase; PFAM: RQC domain; Helicase, C-terminal; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase/RNase D C-terminal, HRDC domain; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; RQC domain; Helicase/RNase D C-terminal, HRDC domain; SPTR: ATP-dependent DNA helicase RecQ; TIGRFAM: DNA helicase, ATP-dependent, RecQ type, bacterial; DNA helicase, ATP-dependent, RecQ type; IMG reference gene:2504105861 [...] | 0.678 |
Bcop_0931 | Bcop_0726 | Bcop_0931 | Bcop_0726 | UvrD/REP helicase; COGs: COG0210 Superfamily I DNA and RNA helicase; InterPro IPR000212; KEGG: bfs:BF2555 putative helicase; PFAM: DNA helicase, UvrD/REP type; SPTR: Putative uncharacterized protein; IMG reference gene:2504106627; PFAM: UvrD/REP helicase. | COGs: COG0514 Superfamily II DNA helicase; InterProIPR011545:IPR001650:IPR018982:IPR002121:IPR 014001:IPR006293:IPR004589; KEGG: bfs:BF3249 putative ATP-dependent DNA helicase; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; RQC domain; Helicase/RNase D C-terminal, HRDC domain; SMART: RQC domain; DEAD-like helicase, N-terminal; Helicase, C-terminal; Helicase/RNase D C-terminal, HRDC domain; SPTR: ATP-dependent DNA helicase RecQ; TIGRFAM: DNA helicase, ATP-dependent, RecQ type, bacterial; DNA helicase, ATP-dependent, RecQ type; IMG reference gene:2504106414 [...] | 0.694 |
Bcop_0931 | Bcop_0930 | Bcop_0931 | Bcop_0930 | UvrD/REP helicase; COGs: COG0210 Superfamily I DNA and RNA helicase; InterPro IPR000212; KEGG: bfs:BF2555 putative helicase; PFAM: DNA helicase, UvrD/REP type; SPTR: Putative uncharacterized protein; IMG reference gene:2504106627; PFAM: UvrD/REP helicase. | Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. | 0.701 |
Bcop_0931 | Bcop_0932 | Bcop_0931 | Bcop_0932 | UvrD/REP helicase; COGs: COG0210 Superfamily I DNA and RNA helicase; InterPro IPR000212; KEGG: bfs:BF2555 putative helicase; PFAM: DNA helicase, UvrD/REP type; SPTR: Putative uncharacterized protein; IMG reference gene:2504106627; PFAM: UvrD/REP helicase. | COGs: COG0019 Diaminopimelate decarboxylase; InterPro IPR022643:IPR005730; KEGG: bfs:BF2554 putative carboxynorspermidine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2, C-terminal; SPTR: Carboxynorspermidine decarboxylase; TIGRFAM: Carboxynorspermidine decarboxylase; IMG reference gene:2504106628; PFAM: Pyridoxal-dependent decarboxylase, C-terminal sheet domain; TIGRFAM: carboxynorspermidine decarboxylase. | 0.824 |
Bcop_0931 | Bcop_0975 | Bcop_0931 | Bcop_0975 | UvrD/REP helicase; COGs: COG0210 Superfamily I DNA and RNA helicase; InterPro IPR000212; KEGG: bfs:BF2555 putative helicase; PFAM: DNA helicase, UvrD/REP type; SPTR: Putative uncharacterized protein; IMG reference gene:2504106627; PFAM: UvrD/REP helicase. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.778 |
Bcop_0931 | Bcop_1263 | Bcop_0931 | Bcop_1263 | UvrD/REP helicase; COGs: COG0210 Superfamily I DNA and RNA helicase; InterPro IPR000212; KEGG: bfs:BF2555 putative helicase; PFAM: DNA helicase, UvrD/REP type; SPTR: Putative uncharacterized protein; IMG reference gene:2504106627; PFAM: UvrD/REP helicase. | COGs: COG0847 DNA polymerase III epsilon subunit and related 3'-5' exonuclease; InterPro IPR013520:IPR001357:IPR006055; KEGG: clj:CLJU_c36230 putative exonuclease with a BRCT domain; PFAM: Exonuclease, RNase T/DNA polymerase III; BRCT; SMART: Exonuclease; BRCT; SPTR: Exonuclease; IMG reference gene:2504106969; PFAM: Exonuclease; BRCA1 C Terminus (BRCT) domain. | 0.801 |
Bcop_0931 | polA | Bcop_0931 | Bcop_0354 | UvrD/REP helicase; COGs: COG0210 Superfamily I DNA and RNA helicase; InterPro IPR000212; KEGG: bfs:BF2555 putative helicase; PFAM: DNA helicase, UvrD/REP type; SPTR: Putative uncharacterized protein; IMG reference gene:2504106627; PFAM: UvrD/REP helicase. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.737 |