STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcop_0936InterPro IPR019734:IPR001440; KEGG: bth:BT_4254 hypothetical protein; PFAM: Tetratricopeptide TPR-1; SPTR: Putative uncharacterized protein; IMG reference gene:2504106637. (227 aa)    
Predicted Functional Partners:
Bcop_0938
Protein of unknown function DUF721; InterPro IPR007922; KEGG: bfs:BF0878 hypothetical protein; PFAM: Protein of unknown function DUF721/UPF0232; SPTR: Putative uncharacterized protein; IMG reference gene:2504106639; PFAM: Protein of unknown function (DUF721).
 
     0.807
Bcop_2404
KEGG: bfr:BF1077 peptidyl-prolyl cis-trans isomerase; SPTR: Peptidyl-prolyl cis-trans isomerase; IMG reference gene:2504108136.
  
    0.756
Bcop_0397
KEGG: pgn:PGN_1678 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106060; PFAM: Protein of unknown function (DUF2795).
  
     0.754
Bcop_2456
Hypothetical protein; COGs: COG1452 Organic solvent tolerance protein OstA; KEGG: bfr:BF3817 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504108189.
  
   
 0.736
Bcop_0697
KEGG: bth:BT_4000 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106378.
  
     0.734
recF
DNA replication and repair protein recF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family.
 
     0.728
ribH
6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin.
  
    0.715
Bcop_0267
KEGG: bth:BT_3446 cell division protein FtsQ; SPTR: Putative uncharacterized protein; manually curated; IMG reference gene:2504105926.
  
     0.698
Bcop_0329
KEGG: bth:BT_3247 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504105990; PFAM: Protein of unknown function (DUF2723).
  
     0.697
Bcop_0276
KEGG: bfs:BF0244 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504105937; PFAM: Protein of unknown function (DUF3109).
  
     0.664
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
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