STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcop_0948L-asparaginase, type I; COGs: COG0252 L-asparaginase/ Glu-tRNAGln amidotransferase subunit D; InterPro IPR006034:IPR006033; KEGG: bfs:BF2680 putative L-asparaginase I; PFAM: Asparaginase/glutaminase; PRIAM: 1-alkyl-2-acetylglycerophosphocholine esterase; SMART: Asparaginase/glutaminase; SPTR: Putative L-asparaginase I; TIGRFAM: L-asparaginase, type I; IMG reference gene:2504106649; PFAM: Asparaginase; TIGRFAM: L-asparaginases, type I. (349 aa)    
Predicted Functional Partners:
Bcop_2236
COGs: COG1027 Aspartate ammonia-lyase; InterPro IPR022761:IPR018951; KEGG: bfs:BF4037 aspartate ammonia-lyase; PFAM: Lyase 1, N-terminal; Fumarase C, C-terminal; PRIAM: Aspartate ammonia-lyase; SPTR: Putative uncharacterized protein; IMG reference gene:2504107957; PFAM: Fumarase C C-terminus; Lyase; TIGRFAM: aspartate ammonia-lyase.
  
 
 0.945
panD
Aspartate 1-decarboxylase; Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine.
     
 0.903
pyrB
COGs: COG0540 Aspartate carbamoyltransferase catalytic chain; HAMAP: Aspartate carbamoyltransferase, eukaryotic; InterPro IPR002082:IPR006132:IPR006131; KEGG: bth:BT_0742 aspartate carbamoyltransferase catalytic subunit; PFAM: Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain; Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding; PRIAM: Aspartate carbamoyltransferase; SPTR: Aspartate carbamoyltransferase; TIGRFAM: Aspartate carbamoyltransferase, eukaryotic; IMG reference gene:2504107748; PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; [...]
  
  
  0.896
Bcop_0402
L-aspartate oxidase; Catalyzes the oxidation of L-aspartate to iminoaspartate.
   
 
 0.893
Bcop_1007
COGs: COG0527 Aspartokinase; InterPro IPR001048:IPR001341; KEGG: bth:BT_1375 aspartokinase; PFAM: Aspartate/glutamate/uridylate kinase; PRIAM: Aspartate kinase; SPTR: Putative uncharacterized protein; TIGRFAM: Aspartate kinase domain; IMG reference gene:2504106709; PFAM: Amino acid kinase family; TIGRFAM: aspartate kinase; Belongs to the aspartokinase family.
  
  
 0.893
pyrI
Aspartate carbamoyltransferase regulatory chain; Involved in allosteric regulation of aspartate carbamoyltransferase.
  
  
  0.892
Bcop_1325
COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase; InterPro IPR004839; KEGG: bth:BT_2415 aspartate aminotransferase; PFAM: Aminotransferase, class I/classII; PRIAM: Aspartate transaminase; SPTR: Aspartate aminotransferase; IMG reference gene:2504107033; PFAM: Aminotransferase class I and II.
    
 0.890
Bcop_0611
COGs: COG0137 Argininosuccinate synthase; InterPro IPR001518; KEGG: aps:CFPG_348 argininosuccinate synthase; PFAM: Argininosuccinate synthase; PRIAM: Argininosuccinate synthase; SPTR: Argininosuccinate synthase; IMG reference gene:2504106288; PFAM: Arginosuccinate synthase; TIGRFAM: argininosuccinate synthase.
   
 
 0.884
Bcop_1057
COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR002872:IPR015590; KEGG: bvu:BVU_3604 putative proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydraogenase; PFAM: Aldehyde dehydrogenase domain; Proline dehydrogenase; SPTR: Putative uncharacterized protein; IMG reference gene:2504106759; PFAM: Proline dehydrogenase; Aldehyde dehydrogenase family.
   
 
 0.823
Bcop_1299
COGs: COG1003 Glycine cleavage system protein P (pyridoxal-binding) C-terminal domain; InterPro IPR003437:IPR020580; KEGG: bfs:BF2079 glycine dehydrogenase; PFAM: Glycine cleavage system P-protein, N-terminal; SPTR: Glycine dehydrogenase [decarboxylating]; TIGRFAM: Glycine cleavage system P protein, homodimeric; IMG reference gene:2504107006; PFAM: Glycine cleavage system P-protein; TIGRFAM: glycine dehydrogenase (decarboxylating); Belongs to the GcvP family.
     
 0.739
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
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