Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bcop_0959KEGG: syp:SYNPCC7002_A1479 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106660. (141 aa)    
Predicted Functional Partners:
Bcop_0960
Protein of unknown function DUF1735; InterPro IPR013728; KEGG: bth:BT_1045 hypothetical protein; PFAM: Domain of unknown function DUF1735; SPTR: Putative uncharacterized protein; IMG reference gene:2504106661; PFAM: Domain of unknown function (DUF1735).
       0.476
Bcop_0961
KEGG: bth:BT_1044 hypothetical protein; SPTR: Putative secreted endoglycosidase, GH family 18; IMG reference gene:2504106662.
       0.467
Bcop_0962
KEGG: bth:BT_1043 hypothetical protein; SPTR: SusD homolog; IMG reference gene:2504106663.
       0.440
Bcop_0963
COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: bth:BT_1042 hypothetical protein; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: SusC homolog; IMG reference gene:2504106664; PFAM: Phage late control gene D protein (GPD); TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family.
       0.408
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
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