STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcop_0965RNA polymerase, sigma-24 subunit, ECF subfamily; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR013249:IPR014284:IPR014327; KEGG: bfs:BF1308 putative RNA polymerase ECF-type sigma factor; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma-70, Bacteroidetes type; RNA polymerase sigma-70; IMG reference gene:2504106666; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; R [...] (194 aa)    
Predicted Functional Partners:
Bcop_0964
anti-FecI sigma factor, FecR; COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: bfs:BF1309 putative anti-sigma factor; PFAM: FecR protein; SPTR: Putative anti-sigma factor; IMG reference gene:2504106665; PFAM: FecR protein.
 
   0.806
Bcop_1245
anti-FecI sigma factor, FecR; COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: bth:BT_1052 putative anti-sigma factor; PFAM: FecR protein; SPTR: Anti-sigma factor; IMG reference gene:2504106949; PFAM: FecR protein.
 
   0.658
Bcop_1827
anti-FecI sigma factor, FecR; COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: pdi:BDI_3132 putative anti-sigma factor; PFAM: FecR protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504107543; PFAM: FecR protein.
  
   0.631
Bcop_2158
anti-FecI sigma factor, FecR; COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: bfs:BF3573 putative anti sigma factor; PFAM: FecR protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504107879; PFAM: FecR protein.
  
   0.629
Bcop_1065
anti-FecI sigma factor, FecR; COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: bth:BT_1279 putative anti-sigma factor; PFAM: FecR protein; SPTR: Putative anti-sigma factor; IMG reference gene:2504106767; PFAM: FecR protein.
  
   0.621
Bcop_2057
anti-FecI sigma factor, FecR; COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: pdi:BDI_2324 putative anti-sigma factor; PFAM: FecR protein; SPTR: Putative anti-sigma factor; IMG reference gene:2504107776; PFAM: FecR protein.
  
   0.593
Bcop_0623
Beta-N-acetylhexosaminidase; COGs: COG1472 Beta-glucosidase-related glycosidase; InterPro IPR001764:IPR001466; KEGG: bfr:BF0567 beta-N-acetylglucosaminidase; PFAM: Glycoside hydrolase, family 3, N-terminal; Beta-lactamase-related; PRIAM: Beta-N-acetylhexosaminidase; SPTR: Putative uncharacterized protein; IMG reference gene:2504106301; PFAM: Glycosyl hydrolase family 3 N terminal domain; Beta-lactamase.
  
 
  0.503
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.487
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.478
Bcop_0966
GCN5-related N-acetyltransferase; COGs: COG2153 acyltransferase; InterPro IPR000182; KEGG: zpr:ZPR_0012 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase (GNAT) domain; SPTR: Putative uncharacterized protein; IMG reference gene:2504106667; PFAM: Acetyltransferase (GNAT) family.
       0.478
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
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