STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcop_0967KEGG: bfs:BF2636 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106668. (230 aa)    
Predicted Functional Partners:
Bcop_0968
Peptidoglycan-binding lysin domain protein; InterPro IPR002482:IPR018392; KEGG: bfs:BF2635 hypothetical protein; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup; SPTR: LysM-repeat proteins and domains; IMG reference gene:2504106669; PFAM: LppC putative lipoprotein; LysM domain.
 
     0.861
Bcop_0527
KEGG: bth:BT_3578 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106201; PFAM: Protein of unknown function (DUF3316).
  
     0.762
Bcop_0775
KEGG: bth:BT_4239 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106463; PFAM: Protein of unknown function (DUF3256).
  
     0.762
Bcop_0599
KEGG: bfs:BF0451 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106273.
  
    0.761
Bcop_2188
KEGG: bfs:BF1652 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504107909.
  
    0.750
Bcop_2168
Sporulation domain-containing protein; InterPro IPR007730; KEGG: bfs:BF1670 hypothetical protein; PFAM: Sporulation-related domain; SPTR: Putative uncharacterized protein; IMG reference gene:2504107889; PFAM: Sporulation related domain.
  
     0.748
Bcop_0729
KEGG: bfs:BF3246 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106417; PFAM: DNA alkylation repair enzyme.
  
     0.745
Bcop_1033
KEGG: bfs:BF0922 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106735.
  
     0.745
Bcop_0848
KEGG: bfs:BF3407 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106537.
  
     0.735
Bcop_1405
KEGG: bfs:BF2370 putative lipoprotein; SPTR: Putative uncharacterized protein; IMG reference gene:2504107114.
  
     0.712
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
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