STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcop_0983Outer membrane assembly lipoprotein YfiO; COGs: COG4105 DNA uptake lipoprotein; InterPro IPR017689; KEGG: bfs:BF2639 lipoprotein; SPTR: Putative uncharacterized protein; TIGRFAM: Outer membrane assembly lipoprotein YfiO; IMG reference gene:2504106684; TIGRFAM: outer membrane assembly lipoprotein YfiO. (272 aa)    
Predicted Functional Partners:
Bcop_0597
COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR010827:IPR000184:IPR016474; KEGG: bth:BT_3725 putative outer membrane protein; PFAM: Bacterial surface antigen (D15); Surface antigen variable number; SPTR: Putative uncharacterized protein; TIGRFAM: Outer membrane assembly protein, YaeT; IMG reference gene:2504106271; PFAM: Surface antigen variable number repeat; TIGRFAM: outer membrane protein assembly complex, YaeT protein.
 
 
 0.958
Bcop_0984
KEGG: bfs:BF2638 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106685; PFAM: RNA polymerase Rpb6.
 
 
 
 0.941
Bcop_1408
Surface antigen (D15); COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR010827:IPR000184; KEGG: bfs:BF2374 putative surface membrane protein; PFAM: Bacterial surface antigen (D15); Surface antigen variable number; SPTR: Putative surface membrane protein; IMG reference gene:2504107117; PFAM: Surface antigen.
 
 
 0.921
Bcop_1535
Patatin; COGs: COG1752 esterase of the alpha-beta hydrolase superfamily; InterPro IPR002641; KEGG: bfs:BF2490 hypothetical protein; PFAM: Patatin/Phospholipase A2-related; SPTR: Putative uncharacterized protein; IMG reference gene:2504107250; PFAM: Patatin-like phospholipase.
  
 
 0.783
Bcop_0329
KEGG: bth:BT_3247 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504105990; PFAM: Protein of unknown function (DUF2723).
  
     0.765
Bcop_0198
KEGG: bfs:BF3887 hypothetical protein; SPTR: Putative exported protein; IMG reference gene:2504105857.
 
  
 0.731
Bcop_0985
KEGG: bfs:BF2637 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106686.
 
     0.728
Bcop_0596
Outer membrane chaperone Skp (OmpH); COGs: COG2825 Outer membrane protein; InterPro IPR005632; KEGG: bth:BT_3724 cationic outer membrane protein precursor; PFAM: Outer membrane chaperone Skp (OmpH); SMART: Outer membrane chaperone Skp (OmpH); SPTR: Outer membrane protein; IMG reference gene:2504106270; PFAM: Outer membrane protein (OmpH-like).
 
   
 0.724
Bcop_2456
Hypothetical protein; COGs: COG1452 Organic solvent tolerance protein OstA; KEGG: bfr:BF3817 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504108189.
  
  
 0.714
Bcop_0377
KEGG: bfs:BF0158 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106039.
  
     0.705
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.