STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcop_1003Major facilitator superfamily MFS_1; InterPro IPR011701; KEGG: bfs:BF1985 putative transmembrane transporter protein; PFAM: Major facilitator superfamily MFS-1; SPTR: Putative uncharacterized protein; IMG reference gene:2504106705; PFAM: Major Facilitator Superfamily. (410 aa)    
Predicted Functional Partners:
Bcop_1002
COGs: COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductase; InterPro IPR006638:IPR007197:IPR010723:IPR004558; KEGG: bfr:BF1914 coproporphyrinogen III oxidase; PFAM: HemN, C-terminal; Radical SAM; SMART: Elongator protein 3/MiaB/NifB; SPTR: Putative uncharacterized protein; TIGRFAM: Oxygen-independent coproporphyrinogen III oxidase HemN; IMG reference gene:2504106704; PFAM: Radical SAM superfamily; HemN C-terminal region; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
 
   
 0.878
Bcop_1004
COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: bfr:BF1916 putative TonB-dependent outer membrane protein; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: Putative uncharacterized protein; IMG reference gene:2504106706; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain.
 
     0.875
Bcop_1001
Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.
 
     0.852
Bcop_0680
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
   
 
  0.504
Bcop_0836
KEGG: bth:BT_0249 5-methyltetrahydrofolate--homocysteine methyltransferase or methionine synthase; SPTR: 5-methyltetrahydrofolate--homocysteine methyltransferase or methionine synthase; IMG reference gene:2504106525.
   
 
  0.504
Bcop_0658
Hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
  
  
  0.481
Bcop_1089
COGs: COG3005 Nitrate/TMAO reductase membrane-bound tetraheme cytochrome c subunit; InterPro IPR005126:IPR017571; KEGG: pgn:PGN_1745 putative NapC/NirT cytochrome c-type protein; PFAM: NapC/NirT cytochrome c, N-terminal; SPTR: Quinol oxidase; TIGRFAM: Cytochrome c nitrate reductase, small subunit; IMG reference gene:2504106791; PFAM: NapC/NirT cytochrome c family, N-terminal region; TIGRFAM: cytochrome c nitrate reductase, small subunit.
  
  
  0.424
Bcop_0159
Biotin/lipoyl attachment domain-containing protein; COGs: COG1566 Multidrug resistance efflux pump; InterPro IPR000089; KEGG: bfs:BF3760 hypothetical protein; PFAM: Biotin/lipoyl attachment; SPTR: Putative uncharacterized protein; IMG reference gene:2504105815; PFAM: HlyD family secretion protein.
  
 
 0.400
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
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