STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcop_1015KEGG: bfs:BF2859 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106717. (508 aa)    
Predicted Functional Partners:
Bcop_1014
Beta-lactamase domain protein; COGs: COG1235 Metal-dependent hydrolase of the beta-lactamase superfamily I; InterPro IPR001279; KEGG: bfs:BF2860 putative hydrolase; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like; SPTR: Metal-dependent hydrolase; IMG reference gene:2504106716; PFAM: Metallo-beta-lactamase superfamily.
       0.669
murB
UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation.
       0.649
Bcop_1012
KEGG: bfs:BF2862 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106714.
       0.638
Bcop_1011
L-threonine 3-dehydrogenase; COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: bfs:BF2863 putative epimerase; PFAM: NAD-dependent epimerase/dehydratase; PRIAM: L-threonine 3-dehydrogenase; SPTR: NAD-dependent nucleotide-diphosphate-sugar epimerase; IMG reference gene:2504106713; PFAM: NAD dependent epimerase/dehydratase family.
       0.601
Bcop_1016
DNA mismatch repair protein MutS domain protein; COGs: COG0249 Mismatch repair ATPase (MutS family); InterPro IPR000432; KEGG: pmz:HMPREF0659_A5376 MutS domain V protein; PFAM: DNA mismatch repair protein MutS, C-terminal; SMART: DNA mismatch repair protein MutS, C-terminal; SPTR: MutS domain protein; IMG reference gene:2504106718; PFAM: MutS domain V.
       0.527
kbl
2-amino-3-ketobutyrate coenzyme A ligase; Catalyzes the cleavage of 2-amino-3-ketobutyrate to glycine and acetyl-CoA.
       0.454
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
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