STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcop_1100KEGG: pph:Ppha_1411 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106802. (320 aa)    
Predicted Functional Partners:
Bcop_1101
Hypothetical protein; KEGG: fnu:FN0180 TPR repeat-containing protein; SPTR: Tetratricopeptide repeat family protein; IMG reference gene:2504106803.
       0.531
Bcop_1099
Protein of unknown function DUF6 transmembrane; COGs: COG2962 permease; InterPro IPR000620; KEGG: bfs:BF1274 putative transmembrane protein; PFAM: Drug/metabolite transporter; SPTR: Putative transmembrane protein; IMG reference gene:2504106801; PFAM: EamA-like transporter family.
       0.483
Bcop_1102
Export-related chaperone CsaA; COGs: COG0073 EMAP domain; InterPro IPR002547:IPR008231; KEGG: chu:CHU_3785 methionine--tRNA ligase (methionine tRNA synthetase); PFAM: tRNA-binding domain; SPTR: Methionine--tRNA ligase (Methionine tRNA synthetase); TIGRFAM: Secretion chaperone CsaA; IMG reference gene:2504106804; PFAM: Putative tRNA binding domain; TIGRFAM: methionyl-tRNA synthetase C-terminal region/beta chain; export-related chaperone CsaA.
       0.407
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
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