Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Bcop_1111YidE/YbjL duplication; COGs: COG2985 permease; InterPro IPR006512; KEGG: pdi:BDI_1750 hypothetical protein; PFAM: YidE/YbjL duplication; SPTR: Putative membrane protein; TIGRFAM: YidE/YbjL duplication; IMG reference gene:2504106813; PFAM: Predicted Permease Membrane Region; TIGRFAM: AspT/YidE/YbjL antiporter duplication domain. (168 aa)    
Predicted Functional Partners:
Bcop_1112
AAA ATPase central domain protein; COGs: COG0464 ATPase of the AAA+ class; InterPro IPR003593:IPR003959; KEGG: pmz:HMPREF0659_A5347 ATPase, AAA family; PFAM: ATPase, AAA-type, core; SMART: ATPase, AAA+ type, core; SPTR: ATPase, AAA family; IMG reference gene:2504106814; PFAM: ATPase family associated with various cellular activities (AAA).
       0.441
Bcop_1113
KEGG: pmz:HMPREF0659_A5348 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106815.
       0.441
Bcop_1114
KEGG: pmz:HMPREF0659_A5349 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106816; PFAM: Domain of unknown function (DUF1994).
       0.441
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
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