STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcop_1130COGs: COG3799 Methylaspartate ammonia-lyase; InterPro IPR022665:IPR022662:IPR006395; KEGG: tde:TDE2235 methylaspartate ammonia-lyase; PFAM: Methylaspartate ammonia-lyase, C-terminal; Methylaspartate ammonia-lyase, N-terminal; PRIAM: Methylaspartate ammonia-lyase; SPTR: Methylaspartate ammonia-lyase; TIGRFAM: Methylaspartate ammonia-lyase; IMG reference gene:2504106833; PFAM: Methylaspartate ammonia-lyase C-terminus; Methylaspartate ammonia-lyase N-terminus; TIGRFAM: methylaspartate ammonia-lyase. (414 aa)    
Predicted Functional Partners:
glmS
Methylaspartate mutase S chain; Catalyzes the carbon skeleton rearrangement of L-glutamate to L-threo-3-methylaspartate ((2S,3S)-3-methylaspartate).
 
  
  0.975
glmE
Methylaspartate mutase, E subunit; Catalyzes the carbon skeleton rearrangement of L-glutamate to L-threo-3-methylaspartate ((2S,3S)-3-methylaspartate).
 
  
 0.975
Bcop_1133
KEGG: dhd:Dhaf_4390 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106836.
 
     0.920
Bcop_1128
Conserved hypothetical protein CHP01319, GlmL; InterPro IPR006230; KEGG: drm:Dred_2691 glutamate mutase, MutL; SPTR: DNA mismatch repair protein mutL; TIGRFAM: Conserved hypothetical protein CHP01319, GlmL; IMG reference gene:2504106831; TIGRFAM: conserved hypothetical protein.
 
     0.919
Bcop_1131
KEGG: drm:Dred_1876 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106834; PFAM: Protein of unknown function (DUF1446).
 
     0.866
Bcop_1132
KEGG: aar:Acear_0482 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106835.
 
     0.816
Bcop_1134
Hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; COGs: COG1951 Tartrate dehydratase alpha subunit/Fumarate hydratase class I N-terminal domain; InterPro IPR004646; KEGG: amt:Amet_3413 fumarate hydratase; PFAM: Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain; PRIAM: Fumarate hydratase; SPTR: Fumarate hydratase, alpha subunit; TIGRFAM: Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain; IMG reference gene:2504106837; PFAM: Fumarate hydratase (Fumerase); TIGRFAM: hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region.
       0.666
Bcop_1135
Hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; COGs: COG1838 Tartrate dehydratase beta subunit/Fumarate hydratase class I C-terminal domain; InterPro IPR004647; KEGG: amt:Amet_3412 tartrate/fumarate subfamily Fe-S type hydro-lyase beta subunit; PFAM: Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain; PRIAM: Fumarate hydratase; SPTR: Fumarate hydratase, class I; TIGRFAM: Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain; IMG reference gene:2504106838; PFAM: Fumarase C-terminus; TIGRFAM: hydro-lyases, Fe-S type, tartrate/fumarate subf [...]
       0.657
Bcop_1136
DEAD/DEAH box helicase domain protein; COGs: COG0513 Superfamily II DNA and RNA helicase; InterPro IPR014001:IPR001650:IPR011545:IPR005580; KEGG: bth:BT_1154 ATP-independent RNA helicase; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; DbpA, RNA-binding; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; SPTR: ATP-dependent RNA helicase; IMG reference gene:2504106839; PFAM: Helicase conserved C-terminal domain; DbpA RNA binding domain; DEAD/DEAH box helicase.
       0.400
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
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