STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcop_1366KEGG: cph:Cpha266_1988 transglycosylase-associated protein; SPTR: Transglycosylase-associated protein; IMG reference gene:2504107075. (85 aa)    
Predicted Functional Partners:
Bcop_1365
InterPro IPR007341; KEGG: bfs:BF4011 putative transmembrane protein, transglycosylase associated; PFAM: Transglycosylase-associated protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504107074; PFAM: Transglycosylase associated protein.
       0.737
Bcop_1367
COGs: COG0847 DNA polymerase III epsilon subunit and related 3'-5' exonuclease; InterPro IPR013520:IPR006055; KEGG: pru:PRU_1188 exonuclease; PFAM: Exonuclease, RNase T/DNA polymerase III; SMART: Exonuclease; SPTR: Putative uncharacterized protein; IMG reference gene:2504107076; PFAM: Exonuclease.
       0.450
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
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