STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcop_1412KEGG: pdi:BDI_1028 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504107121; PFAM: Protein of unknown function (DUF3078). (294 aa)    
Predicted Functional Partners:
lspA
Lipoprotein signal peptidase; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.
  
     0.465
Bcop_1411
KEGG: cel:K08H10.2 hypothetical protein; SPTR: Late embryogenesis abundant protein; IMG reference gene:2504107120.
       0.450
Bcop_1956
TonB-dependent receptor; InterPro IPR012910:IPR000531; KEGG: bfs:BF2195 hypothetical protein; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: Putative exported protein; IMG reference gene:2504107672; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family.
  
     0.450
rpmC
Ribosomal protein L29; InterPro IPR001854; KEGG: bth:BT_2719 50S ribosomal protein L29; PFAM: Ribosomal protein L29; SPTR: 50S ribosomal protein L29; TIGRFAM: Ribosomal protein L29; IMG reference gene:2504105894; PFAM: Ribosomal L29 protein; TIGRFAM: ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.
  
     0.445
Bcop_0185
COGs: COG1538 Outer membrane protein; KEGG: fbc:FB2170_10631 putative transport-related membrane protein; SPTR: Cation efflux protein; IMG reference gene:2504105842; PFAM: Outer membrane efflux protein.
  
     0.443
Bcop_0049
KEGG: bfs:BF3496 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504105704.
  
     0.431
Bcop_2368
InterPro IPR006628; KEGG: bvu:BVU_3822 hypothetical protein; SMART: PUR-alpha/beta/gamma, DNA/RNA-binding; SPTR: Putative uncharacterized protein; IMG reference gene:2504108100; PFAM: Protein of unknown function (DUF3276).
  
     0.410
Bcop_1118
COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: bfs:BF2044 putative TonB-dependent outer membrane receptor protein; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent receptor; IMG reference gene:2504106821; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain.
  
     0.407
Bcop_1955
RagB/SusD domain-containing protein; InterPro IPR012944; KEGG: bfr:BF2139 hypothetical protein; PFAM: RagB/SusD; SPTR: Putative uncharacterized protein; IMG reference gene:2504107671; PFAM: SusD family.
  
     0.401
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
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