STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcop_1459Sulfatase; COGs: COG1368 Phosphoglycerol transferase and related protein alkaline phosphatase superfamily; InterPro IPR000917; KEGG: fjo:Fjoh_2881 sulfatase; PFAM: Sulfatase; SPTR: Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily; IMG reference gene:2504107170; PFAM: Sulfatase. (698 aa)    
Predicted Functional Partners:
Bcop_1460
KEGG: tde:TDE1526 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504107171; PFAM: BNR/Asp-box repeat.
       0.522
Bcop_1490
Conserved hypothetical protein CHP00147; COGs: COG1597 Sphingosine kinase; InterPro IPR005218:IPR001206; KEGG: bfs:BF2462 hypothetical protein; PFAM: Diacylglycerol kinase, catalytic domain; SMART: Diacylglycerol kinase, catalytic domain; SPTR: Putative uncharacterized protein; TIGRFAM: Diacylglycerol/lipid kinase; IMG reference gene:2504107201; PFAM: Diacylglycerol kinase catalytic domain; TIGRFAM: lipid kinase, YegS/Rv2252/BmrU family.
 
   
 0.402
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
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