STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcop_1547InterPro IPR001440:IPR019734; KEGG: bfr:BF2412 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR-1; SMART: Tetratricopeptide repeat; SPTR: Putative uncharacterized protein; IMG reference gene:2504107262; PFAM: Tetratricopeptide repeat. (405 aa)    
Predicted Functional Partners:
Bcop_0740
KEGG: bfs:BF0897 putative transmembrane protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106428.
  
     0.757
Bcop_2245
InterPro IPR001440:IPR019734; KEGG: bth:BT_1675 hypothetical protein; PFAM: Tetratricopeptide TPR-1; SPTR: Putative uncharacterized protein; IMG reference gene:2504107966; PFAM: Tetratricopeptide repeat.
  
  
  0.754
Bcop_0489
InterPro IPR000866; KEGG: bfs:BF4128 hypothetical protein; PFAM: Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant; SPTR: Lipoprotein; IMG reference gene:2504106156; PFAM: AhpC/TSA family.
  
    0.750
Bcop_0775
KEGG: bth:BT_4239 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106463; PFAM: Protein of unknown function (DUF3256).
  
     0.743
Bcop_0729
KEGG: bfs:BF3246 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106417; PFAM: DNA alkylation repair enzyme.
  
     0.742
Bcop_2188
KEGG: bfs:BF1652 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504107909.
  
     0.742
Bcop_0438
KEGG: bth:BT_2817 putative TonB-dependent receptor; SPTR: Putative uncharacterized protein; IMG reference gene:2504106102.
  
     0.736
Bcop_1231
Protein of unknown function DUF490; InterPro IPR007452; KEGG: bth:BT_0921 hypothetical protein; PFAM: Protein of unknown function DUF490; SPTR: Putative uncharacterized protein; IMG reference gene:2504106935; PFAM: Family of unknown function (DUF490).
  
     0.734
Bcop_0599
KEGG: bfs:BF0451 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106273.
  
     0.729
Bcop_1033
KEGG: bfs:BF0922 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106735.
  
     0.727
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
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