STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcop_1578KEGG: bth:BT_0880 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504107293. (103 aa)    
Predicted Functional Partners:
Bcop_1579
Conserved hypothetical protein CHP00245; COGs: COG0390 ABC-type uncharacterized transport system permease component; InterPro IPR005226; KEGG: bfs:BF2469 putative ABC transporter membrane protein; PFAM: Conserved hypothetical protein CHP00245; SPTR: Putative uncharacterized protein; IMG reference gene:2504107294; PFAM: Uncharacterised protein family (UPF0014); TIGRFAM: TIGR00245 family protein.
       0.752
Bcop_1580
ABC transporter related protein; COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003439:IPR003593; KEGG: bfs:BF2468 putative ABC transporter ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: Putative uncharacterized protein; IMG reference gene:2504107295; PFAM: ABC transporter.
       0.625
Bcop_1577
COGs: COG1670 Acetyltransferase including N-acetylase of ribosomal protein; KEGG: bth:BT_0780 acetyltransferase; SPTR: Acetyltransferase; IMG reference gene:2504107292.
       0.430
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
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