STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcop_1600KEGG: spe:Spro_1948 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504107315. (159 aa)    
Predicted Functional Partners:
Bcop_1575
Protein of unknown function DUF164; COGs: COG1579 Zn-ribbon protein possibly nucleic acid-binding; InterPro IPR003743; KEGG: bfs:BF2474 hypothetical protein; PFAM: Protein of unknown function DUF164; SPTR: Putative uncharacterized protein; IMG reference gene:2504107290; PFAM: Putative zinc ribbon domain.
    
   0.461
Bcop_2296
KEGG: chu:CHU_1609 surface layer protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504108021.
  
     0.456
Bcop_1601
Protein of unknown function DUF21; COGs: COG1253 Hemolysins and related protein containing CBS domains; InterPro IPR002550:IPR000644:IPR005170; KEGG: bvu:BVU_1331 hypothetical protein; PFAM: Domain of unknown function DUF21; Cystathionine beta-synthase, core; Transporter-associated domain; SPTR: Putative uncharacterized protein; IMG reference gene:2504107316; PFAM: CBS domain; Domain of unknown function DUF21; Transporter associated domain.
       0.439
Bcop_1451
COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: bth:BT_4695 outer membrane efflux protein precursor; PFAM: Outer membrane efflux protein; SPTR: Outer membrane efflux protein; IMG reference gene:2504107162; PFAM: Outer membrane efflux protein.
  
     0.422
Bcop_2355
COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR007492; KEGG: pru:PRU_0491 putative regulatory protein; PFAM: LytTr, DNA-binding domain; SMART: LytTr, DNA-binding domain; SPTR: Putative regulatory protein; IMG reference gene:2504108086; PFAM: LytTr DNA-binding domain.
  
     0.419
Bcop_1060
InterPro IPR013728:IPR001223; KEGG: pmz:HMPREF0659_A6286 endo-beta-N-acetylglucosaminidase F1 domain protein; PFAM: Glycoside hydrolase, family 18, catalytic domain; Domain of unknown function DUF1735; PRIAM: Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase; SPTR: Putative uncharacterized protein; IMG reference gene:2504106762; PFAM: Domain of unknown function (DUF1735); Glycosyl hydrolases family 18.
  
     0.407
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
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