STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcop_1607Hypothetical protein; KEGG: bpb:bpr_III098 RNA-metabolising metallo-beta-lactamase; SPTR: Putative uncharacterized protein; IMG reference gene:2504107322. (338 aa)    
Predicted Functional Partners:
rny
2,3 cyclic-nucleotide 2-phosphodiesterase; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family.
  
 
 0.702
Bcop_0075
Polyprenyl synthetase; COGs: COG0142 Geranylgeranyl pyrophosphate synthase; InterPro IPR000092; KEGG: bth:BT_2058 putative isoprenyl synthetase; PFAM: Polyprenyl synthetase; SPTR: Putative uncharacterized protein; IMG reference gene:2504105731; PFAM: Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
  
    0.533
Bcop_0353
Trans-hexaprenyltranstransferase; COGs: COG0142 Geranylgeranyl pyrophosphate synthase; InterPro IPR000092; KEGG: bfs:BF0105 putative octaprenyl-diphosphate synthase; PFAM: Polyprenyl synthetase; PRIAM: Trans-hexaprenyltranstransferase; SPTR: Putative uncharacterized protein; IMG reference gene:2504106014; PFAM: Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
  
    0.533
Bcop_1606
KEGG: fjo:Fjoh_1361 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504107321.
       0.443
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
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