STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcop_1713KEGG: bth:BT_0227 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504107429. (215 aa)    
Predicted Functional Partners:
Bcop_0200
Hypothetical protein; KEGG: bth:BT_3846 peptidyl-prolyl cis-trans isomerase; SPTR: Peptidyl-prolyl cis-trans isomerase; IMG reference gene:2504105859; PFAM: PPIC-type PPIASE domain.
  
 
   0.545
Bcop_0378
KEGG: bth:BT_3342 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106040; PFAM: Protein of unknown function (DUF3108).
  
     0.515
Bcop_2404
KEGG: bfr:BF1077 peptidyl-prolyl cis-trans isomerase; SPTR: Peptidyl-prolyl cis-trans isomerase; IMG reference gene:2504108136.
  
 
   0.511
Bcop_1712
KEGG: sli:Slin_6759 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504107428.
       0.494
Bcop_2195
Glycoside hydrolase family 25; COGs: COG3757 Lyzozyme M1 (1 4-beta-N-acetylmuramidase); InterPro IPR002053:IPR018077; KEGG: bfr:BF3098 putative glycosylhydrolase; PFAM: Glycoside hydrolase, family 25; SMART: Glycoside hydrolase, family 25 subgroup; SPTR: Putative glycosyl hydrolase; IMG reference gene:2504107916; PFAM: Glycosyl hydrolases family 25.
  
     0.493
Bcop_1598
Putative DNA helicase; COGs: COG1112 Superfamily I DNA and RNA helicase and helicase subunits; KEGG: bth:BT_4344 putative DNA helicase; SPTR: Putative uncharacterized protein; IMG reference gene:2504107313; PFAM: Protein of unknown function (DUF3320).
  
     0.444
Bcop_2192
KEGG: bth:BT_0316 putative hemin receptor; SPTR: Putative hemin receptor; IMG reference gene:2504107913; PFAM: Outer membrane protein transport protein (OMPP1/FadL/TodX).
  
     0.436
Bcop_0469
Endonuclease/exonuclease/phosphatase; InterPro IPR005135; KEGG: bfs:BF4223 hypothetical protein; PFAM: Endonuclease/exonuclease/phosphatase; SPTR: Putative uncharacterized protein; IMG reference gene:2504106136; PFAM: Endonuclease/Exonuclease/phosphatase family.
  
     0.428
Bcop_0618
KEGG: bfs:BF0494 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106296.
  
     0.427
Bcop_1269
Glycoside hydrolase family 76; InterPro IPR005198; KEGG: bth:BT_3301 putative alpha-1,6-mannanase; PFAM: Glycoside hydrolase, family 76; SPTR: Alpha-1,6-mannanase; IMG reference gene:2504106975; PFAM: Glycosyl hydrolase family 76.
  
     0.412
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
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