STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcop_1741ADP-ribosylation/Crystallin J1; COGs: COG1397 ADP-ribosylglycohydrolase; InterPro IPR005502; KEGG: bfo:BRAFLDRAFT_127093 hypothetical protein; PFAM: ADP-ribosylation/Crystallin J1; SPTR: Putative uncharacterized protein; IMG reference gene:2504107457; PFAM: ADP-ribosylglycohydrolase. (311 aa)    
Predicted Functional Partners:
Bcop_0210
KEGG: bth:BT_2685 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504105869.
    
 
 0.534
Bcop_1740
Rubredoxin-type Fe(Cys)4 protein; COGs: COG1773 Rubredoxin; InterPro IPR004039; KEGG: cac:CA_C2778 rubredoxin; PFAM: Rubredoxin-type Fe(Cys)4 protein; SPTR: Rubredoxin; IMG reference gene:2504107456; PFAM: Rubredoxin.
       0.513
Bcop_1742
Fumble domain protein; COGs: COG5146 Pantothenate kinase acetyl-CoA regulated; InterPro IPR002731:IPR011602; KEGG: pdi:BDI_2301 pantothenate kinase; PFAM: Fumble; ATPase, BadF/BadG/BcrA/BcrD type; SPTR: Putative uncharacterized protein; IMG reference gene:2504107458; PFAM: Fumble; TIGRFAM: pantothenate kinase, eukaryotic/staphyloccocal type.
       0.417
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.