STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
Bcop_1829InterPro IPR012944; KEGG: dfe:Dfer_5600 RagB/SusD domain protein; PFAM: RagB/SusD; SPTR: Outer membrane protein; IMG reference gene:2504107545; PFAM: SusD family. (490 aa)    
Predicted Functional Partners:
Bcop_1828
TonB-dependent receptor plug; InterPro IPR011662:IPR012910:IPR000531; KEGG: bth:BT_3310 hypothetical protein; PFAM: TonB-dependent receptor, plug; Secretin/TonB, short N-terminal; TonB-dependent receptor, beta-barrel; SMART: Secretin/TonB, short N-terminal; SPTR: Outer membrane receptor RagA protein; IMG reference gene:2504107544; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; Secretin and TonB N terminus short domain; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family.
 
    0.940
Bcop_2056
COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR011662:IPR012910:IPR000531; KEGG: phe:Phep_2530 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; Secretin/TonB, short N-terminal; SMART: Secretin/TonB, short N-terminal; SPTR: TonB-linked outer membrane receptor protein; IMG reference gene:2504107775; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; Secretin and TonB N terminus short domain; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-l [...]
  
 
   0.833
Bcop_1508
TonB-dependent receptor plug; InterPro IPR012910:IPR000531; KEGG: pdi:BDI_3297 hypothetical protein; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: Putative uncharacterized protein; IMG reference gene:2504107219; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.803
Bcop_2033
TonB-dependent receptor plug; InterPro IPR012910:IPR000531; KEGG: pru:PRU_0154 TonB dependent receptor; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: Putative uncharacterized protein; IMG reference gene:2504107752; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.790
Bcop_1323
TonB-dependent receptor; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_5599 TonB-dependent receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent receptor; IMG reference gene:2504107031; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family.
  
    0.773
Bcop_1827
anti-FecI sigma factor, FecR; COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: pdi:BDI_3132 putative anti-sigma factor; PFAM: FecR protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504107543; PFAM: FecR protein.
 
  
  0.757
Bcop_1956
TonB-dependent receptor; InterPro IPR012910:IPR000531; KEGG: bfs:BF2195 hypothetical protein; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: Putative exported protein; IMG reference gene:2504107672; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.741
Bcop_1243
KEGG: bth:BT_4405 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106947.
  
 
   0.723
Bcop_1342
KEGG: bvu:BVU_1378 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504107051.
  
 0.721
Bcop_1830
KEGG: bth:BT_3313 hypothetical protein; SPTR: Putative lipoprotein; IMG reference gene:2504107546.
       0.705
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
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